MC DNA Help - Outputs
Outputs
Outputs Help
Summary
In the ‘Summary’ section, you can download all the analysis results and the structure / trajectory in a compressed tar.gz file. Also, you can view the structure with DNA in relaxed state and / or the trajectory. Both of them are visualized in NGL viewer.
The “Download all summary in a compressed file” provides the user with the equilibrium structure (as pdb) and the trajectory (in AMBER format mdcrd).
Inputs Summary
List of input parameters used to do the simulation.
Structure
Relaxed structure from “Create Structure” visualized by NGL viewer.
Trajectory
Trajectory from “Create Trajectory” visualized by NGL viewer.
Structure Flexibility Analysis
See “Analysis” in the Help Menu.
Trajectory Flexibility Analysis
See “Analysis” in the Help Menu.