Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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14 |
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15 |
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16 |
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17 |
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18 |
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19 |
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20 |
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21 |
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| 5' |
A |
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A |
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T |
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C |
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C |
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C |
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G |
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T |
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T |
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T |
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C |
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C |
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A |
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A |
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C |
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G |
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A |
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A |
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G |
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G |
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C |
3' |
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| 3' |
T |
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T |
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A |
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G |
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G |
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G |
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C |
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A |
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A |
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A |
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G |
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G |
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T |
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T |
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G |
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C |
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T |
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T |
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C |
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C |
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G |
5' |
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42 |
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41 |
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40 |
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39 |
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38 |
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37 |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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28 |
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27 |
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26 |
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25 |
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24 |
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22 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H61-42_O4-1 | 2.623 | 1.620 |
| Mean | Stdev |
| 1_N1-42_H3-1 | 2.591 | 1.606 |
| Mean | Stdev |
| 10_H3-33_N1-10 | 1.975 | 0.118 |
| Mean | Stdev |
| 10_O4-33_H61-10 | 1.998 | 0.183 |
| Mean | Stdev |
| 11_H41-32_O6-11 | 1.949 | 0.148 |
| Mean | Stdev |
| 11_N3-32_H1-11 | 1.974 | 0.096 |
| Mean | Stdev |
| 11_O2-32_H21-11 | 1.923 | 0.137 |
| Mean | Stdev |
| 12_H41-31_O6-12 | 1.962 | 0.151 |
| Mean | Stdev |
| 12_N3-31_H1-12 | 1.969 | 0.092 |
| Mean | Stdev |
| 12_O2-31_H21-12 | 1.890 | 0.123 |
| Mean | Stdev |
| 13_H61-30_O4-13 | 1.988 | 0.177 |
| Mean | Stdev |
| 13_N1-30_H3-13 | 1.959 | 0.113 |
| Mean | Stdev |
| 14_H61-29_O4-14 | 1.966 | 0.164 |
| Mean | Stdev |
| 14_N1-29_H3-14 | 1.982 | 0.122 |
| Mean | Stdev |
| 15_H41-28_O6-15 | 1.967 | 0.158 |
| Mean | Stdev |
| 15_N3-28_H1-15 | 1.976 | 0.095 |
| Mean | Stdev |
| 15_O2-28_H21-15 | 1.895 | 0.124 |
| Mean | Stdev |
| 16_H1-27_N3-16 | 1.964 | 0.090 |
| Mean | Stdev |
| 16_H21-27_O2-16 | 1.880 | 0.118 |
| Mean | Stdev |
| 16_O6-27_H41-16 | 1.956 | 0.149 |
| Mean | Stdev |
| 17_H61-26_O4-17 | 1.984 | 0.181 |
| Mean | Stdev |
| 17_N1-26_H3-17 | 1.988 | 0.127 |
| Mean | Stdev |
| 18_H61-25_O4-18 | 2.021 | 0.199 |
| Mean | Stdev |
| 18_N1-25_H3-18 | 1.951 | 0.113 |
| Mean | Stdev |
| 19_H1-24_N3-19 | 1.951 | 0.087 |
| Mean | Stdev |
| 19_H21-24_O2-19 | 1.884 | 0.117 |
| Mean | Stdev |
| 19_O6-24_H41-19 | 1.980 | 0.169 |
| Mean | Stdev |
| 2_H61-41_O4-2 | 2.016 | 0.198 |
| Mean | Stdev |
| 2_N1-41_H3-2 | 1.987 | 0.139 |
| Mean | Stdev |
| 20_H1-23_N3-20 | 1.962 | 0.092 |
| Mean | Stdev |
| 20_H21-23_O2-20 | 1.897 | 0.125 |
| Mean | Stdev |
| 20_O6-23_H41-20 | 1.952 | 0.156 |
| Mean | Stdev |
| 21_H41-22_O6-21 | 2.016 | 0.279 |
| Mean | Stdev |
| 21_N3-22_H1-21 | 2.011 | 0.176 |
| Mean | Stdev |
| 21_O2-22_H21-21 | 1.917 | 0.183 |
| Mean | Stdev |
| 3_H3-40_N1-3 | 1.991 | 0.124 |
| Mean | Stdev |
| 3_O4-40_H61-3 | 2.004 | 0.182 |
| Mean | Stdev |
| 4_H41-39_O6-4 | 1.955 | 0.151 |
| Mean | Stdev |
| 4_N3-39_H1-4 | 1.964 | 0.092 |
| Mean | Stdev |
| 4_O2-39_H21-4 | 1.914 | 0.132 |
| Mean | Stdev |
| 5_H41-38_O6-5 | 1.967 | 0.160 |
| Mean | Stdev |
| 5_N3-38_H1-5 | 1.969 | 0.093 |
| Mean | Stdev |
| 5_O2-38_H21-5 | 1.910 | 0.134 |
| Mean | Stdev |
| 6_H41-37_O6-6 | 1.955 | 0.150 |
| Mean | Stdev |
| 6_N3-37_H1-6 | 1.957 | 0.087 |
| Mean | Stdev |
| 6_O2-37_H21-6 | 1.867 | 0.111 |
| Mean | Stdev |
| 7_H1-36_N3-7 | 1.978 | 0.104 |
| Mean | Stdev |
| 7_H21-36_O2-7 | 1.891 | 0.124 |
| Mean | Stdev |
| 7_O6-36_H41-7 | 1.997 | 0.188 |
| Mean | Stdev |
| 8_H3-35_N1-8 | 1.968 | 0.117 |
| Mean | Stdev |
| 8_O4-35_H61-8 | 1.994 | 0.182 |
| Mean | Stdev |
| 9_H3-34_N1-9 | 1.968 | 0.117 |
| Mean | Stdev |
| 9_O4-34_H61-9 | 1.989 | 0.175 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | N1-H3_1-42 | 2.5912 | 1.6062 |
| 1 | H61-O4_1-42 | 2.6226 | 1.6199 |
| 2 | N1-H3_2-41 | 1.9872 | 0.1389 |
| 2 | H61-O4_2-41 | 2.0161 | 0.1983 |
| 3 | H3-N1_3-40 | 1.9913 | 0.1241 |
| 3 | O4-H61_3-40 | 2.0044 | 0.1820 |
| 4 | H41-O6_4-39 | 1.9549 | 0.1508 |
| 4 | N3-H1_4-39 | 1.9637 | 0.0916 |
| 4 | O2-H21_4-39 | 1.9144 | 0.1322 |
| 5 | H41-O6_5-38 | 1.9666 | 0.1596 |
| 5 | N3-H1_5-38 | 1.9689 | 0.0932 |
| 5 | O2-H21_5-38 | 1.9102 | 0.1338 |
| 6 | H41-O6_6-37 | 1.9552 | 0.1497 |
| 6 | N3-H1_6-37 | 1.9568 | 0.0870 |
| 6 | O2-H21_6-37 | 1.8670 | 0.1113 |
| 7 | O6-H41_7-36 | 1.9968 | 0.1879 |
| 7 | H1-N3_7-36 | 1.9777 | 0.1037 |
| 7 | H21-O2_7-36 | 1.8911 | 0.1242 |
| 8 | H3-N1_8-35 | 1.9682 | 0.1172 |
| 8 | O4-H61_8-35 | 1.9940 | 0.1825 |
| 9 | H3-N1_9-34 | 1.9676 | 0.1174 |
| 9 | O4-H61_9-34 | 1.9890 | 0.1749 |
| 10 | H3-N1_10-33 | 1.9750 | 0.1185 |
| 10 | O4-H61_10-33 | 1.9976 | 0.1828 |
| 11 | H41-O6_11-32 | 1.9491 | 0.1482 |
| 11 | N3-H1_11-32 | 1.9743 | 0.0962 |
| 11 | O2-H21_11-32 | 1.9234 | 0.1367 |
| 12 | H41-O6_12-31 | 1.9623 | 0.1511 |
| 12 | N3-H1_12-31 | 1.9692 | 0.0921 |
| 12 | O2-H21_12-31 | 1.8896 | 0.1234 |
| 13 | N1-H3_13-30 | 1.9591 | 0.1127 |
| 13 | H61-O4_13-30 | 1.9883 | 0.1773 |
| 14 | N1-H3_14-29 | 1.9820 | 0.1223 |
| 14 | H61-O4_14-29 | 1.9665 | 0.1640 |
| 15 | H41-O6_15-28 | 1.9673 | 0.1577 |
| 15 | N3-H1_15-28 | 1.9757 | 0.0953 |
| 15 | O2-H21_15-28 | 1.8955 | 0.1241 |
| 16 | O6-H41_16-27 | 1.9557 | 0.1488 |
| 16 | H1-N3_16-27 | 1.9643 | 0.0904 |
| 16 | H21-O2_16-27 | 1.8796 | 0.1185 |
| 17 | N1-H3_17-26 | 1.9877 | 0.1269 |
| 17 | H61-O4_17-26 | 1.9844 | 0.1813 |
| 18 | N1-H3_18-25 | 1.9507 | 0.1134 |
| 18 | H61-O4_18-25 | 2.0207 | 0.1986 |
| 19 | O6-H41_19-24 | 1.9800 | 0.1687 |
| 19 | H1-N3_19-24 | 1.9512 | 0.0873 |
| 19 | H21-O2_19-24 | 1.8840 | 0.1173 |
| 20 | O6-H41_20-23 | 1.9515 | 0.1560 |
| 20 | H1-N3_20-23 | 1.9617 | 0.0920 |
| 20 | H21-O2_20-23 | 1.8966 | 0.1248 |
| 21 | H41-O6_21-22 | 2.0159 | 0.2793 |
| 21 | N3-H1_21-22 | 2.0111 | 0.1764 |
| 21 | O2-H21_21-22 | 1.9167 | 0.1831 |