Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
G |
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C |
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A |
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A |
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A |
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A |
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T |
- |
T |
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T |
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T |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
C |
- |
G |
- |
T |
- |
T |
- |
T |
- |
T |
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A |
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A |
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A |
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A |
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C |
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G |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H1-24_N3-1 | 2.004 | 0.190 |
| Mean | Stdev |
| 1_H21-24_O2-1 | 1.931 | 0.219 |
| Mean | Stdev |
| 1_O6-24_H41-1 | 1.983 | 0.250 |
| Mean | Stdev |
| 10_H3-15_N1-10 | 2.004 | 0.301 |
| Mean | Stdev |
| 10_O4-15_H61-10 | 2.029 | 0.337 |
| Mean | Stdev |
| 11_H1-14_N3-11 | 1.978 | 0.101 |
| Mean | Stdev |
| 11_H21-14_O2-11 | 1.898 | 0.130 |
| Mean | Stdev |
| 11_O6-14_H41-11 | 1.966 | 0.171 |
| Mean | Stdev |
| 12_H41-13_O6-12 | 3.632 | 3.479 |
| Mean | Stdev |
| 12_N3-13_H1-12 | 3.219 | 3.138 |
| Mean | Stdev |
| 12_O2-13_H21-12 | 3.217 | 3.539 |
| Mean | Stdev |
| 2_H41-23_O6-2 | 1.962 | 0.154 |
| Mean | Stdev |
| 2_N3-23_H1-2 | 1.975 | 0.092 |
| Mean | Stdev |
| 2_O2-23_H21-2 | 1.891 | 0.122 |
| Mean | Stdev |
| 3_H61-22_O4-3 | 2.000 | 0.191 |
| Mean | Stdev |
| 3_N1-22_H3-3 | 1.977 | 0.124 |
| Mean | Stdev |
| 4_H61-21_O4-4 | 2.002 | 0.181 |
| Mean | Stdev |
| 4_N1-21_H3-4 | 1.976 | 0.120 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.998 | 0.184 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.965 | 0.115 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.009 | 0.181 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.972 | 0.113 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.971 | 0.115 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.003 | 0.179 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.970 | 0.117 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.998 | 0.182 |
| Mean | Stdev |
| 9_H3-16_N1-9 | 1.976 | 0.124 |
| Mean | Stdev |
| 9_O4-16_H61-9 | 2.001 | 0.186 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | O6-H41_1-24 | 1.9828 | 0.2500 |
| 1 | H1-N3_1-24 | 2.0040 | 0.1904 |
| 1 | H21-O2_1-24 | 1.9308 | 0.2190 |
| 2 | H41-O6_2-23 | 1.9615 | 0.1543 |
| 2 | N3-H1_2-23 | 1.9753 | 0.0920 |
| 2 | O2-H21_2-23 | 1.8912 | 0.1218 |
| 3 | N1-H3_3-22 | 1.9766 | 0.1241 |
| 3 | H61-O4_3-22 | 1.9995 | 0.1911 |
| 4 | N1-H3_4-21 | 1.9758 | 0.1205 |
| 4 | H61-O4_4-21 | 2.0016 | 0.1815 |
| 5 | N1-H3_5-20 | 1.9646 | 0.1146 |
| 5 | H61-O4_5-20 | 1.9981 | 0.1844 |
| 6 | N1-H3_6-19 | 1.9719 | 0.1126 |
| 6 | H61-O4_6-19 | 2.0087 | 0.1811 |
| 7 | H3-N1_7-18 | 1.9714 | 0.1145 |
| 7 | O4-H61_7-18 | 2.0033 | 0.1786 |
| 8 | H3-N1_8-17 | 1.9702 | 0.1168 |
| 8 | O4-H61_8-17 | 1.9981 | 0.1825 |
| 9 | H3-N1_9-16 | 1.9764 | 0.1243 |
| 9 | O4-H61_9-16 | 2.0013 | 0.1864 |
| 10 | H3-N1_10-15 | 2.0044 | 0.3013 |
| 10 | O4-H61_10-15 | 2.0294 | 0.3371 |
| 11 | O6-H41_11-14 | 1.9655 | 0.1712 |
| 11 | H1-N3_11-14 | 1.9775 | 0.1008 |
| 11 | H21-O2_11-14 | 1.8978 | 0.1295 |
| 12 | H41-O6_12-13 | 3.6323 | 3.4787 |
| 12 | N3-H1_12-13 | 3.2186 | 3.1375 |
| 12 | O2-H21_12-13 | 3.2169 | 3.5389 |
