NAFlex. Nucleic Acids Flexibility

Nucleic Acid Analysis - Stiffness Analysis

(Using Curves+ program)

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Interactive Sequence (see Help)

Average Results

Results by Time

Stiffness by Helical Parameters

Stiffness By Base Pair Step

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.592	0.000	0.000	-0.021	0.000	0.000
Slide	0.000	4.867	2.846	0.000	-0.061	-0.109
Rise	0.000	2.846	10.136	0.000	0.060	-0.137
Tilt	-0.021	0.000	0.000	0.045	0.000	0.000
Roll	0.000	-0.061	0.060	0.000	0.031	0.012
Twist	0.000	-0.109	-0.137	0.000	0.012	0.048

[Image courtesy of Curves+]

Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Å²), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.600	0.000	0.000	-0.085	0.000	0.000
Slide	0.000	2.330	0.889	0.000	0.014	-0.099
Rise	0.000	0.889	6.973	0.000	-0.073	-0.204
Tilt	-0.085	0.000	0.000	0.029	0.000	0.000
Roll	0.000	0.014	-0.073	0.000	0.016	0.008
Twist	0.000	-0.099	-0.204	0.000	0.008	0.032

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.803	0.000	0.000	-0.112	0.000	0.000
Slide	0.000	1.654	1.671	0.000	-0.035	-0.131
Rise	0.000	1.671	8.431	0.000	-0.015	-0.149
Tilt	-0.112	0.000	0.000	0.037	0.000	0.000
Roll	0.000	-0.035	-0.015	0.000	0.021	0.006
Twist	0.000	-0.131	-0.149	0.000	0.006	0.029

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.943	0.000	0.000	-0.115	0.000	0.000
Slide	0.000	3.029	0.607	0.000	-0.003	-0.162
Rise	0.000	0.607	8.256	0.000	-0.083	-0.240
Tilt	-0.115	0.000	0.000	0.031	0.000	0.000
Roll	0.000	-0.003	-0.083	0.000	0.017	0.008
Twist	0.000	-0.162	-0.240	0.000	0.008	0.027

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.189	0.000	0.000	-0.141	0.000	0.000
Slide	0.000	2.939	0.757	0.000	-0.004	-0.144
Rise	0.000	0.757	7.808	0.000	-0.052	-0.233
Tilt	-0.141	0.000	0.000	0.032	0.000	0.000
Roll	0.000	-0.004	-0.052	0.000	0.015	0.006
Twist	0.000	-0.144	-0.233	0.000	0.006	0.027

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.394	0.000	0.000	-0.135	0.000	0.000
Slide	0.000	2.871	2.944	0.000	0.037	-0.062
Rise	0.000	2.944	11.829	0.000	0.106	-0.247
Tilt	-0.135	0.000	0.000	0.041	0.000	0.000
Roll	0.000	0.037	0.106	0.000	0.026	0.005
Twist	0.000	-0.062	-0.247	0.000	0.005	0.025

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.160	0.000	0.000	-0.086	0.000	0.000
Slide	0.000	2.750	2.706	0.000	0.020	-0.055
Rise	0.000	2.706	10.807	0.000	0.087	-0.242
Tilt	-0.086	0.000	0.000	0.036	0.000	0.000
Roll	0.000	0.020	0.087	0.000	0.025	0.006
Twist	0.000	-0.055	-0.242	0.000	0.006	0.030

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.142	0.000	0.000	-0.115	0.000	0.000
Slide	0.000	1.370	1.627	0.000	-0.022	-0.089
Rise	0.000	1.627	8.178	0.000	-0.019	-0.152
Tilt	-0.115	0.000	0.000	0.036	0.000	0.000
Roll	0.000	-0.022	-0.019	0.000	0.021	0.008
Twist	0.000	-0.089	-0.152	0.000	0.008	0.030

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.906	0.000	0.000	-0.112	0.000	0.000
Slide	0.000	2.157	1.015	0.000	-0.026	-0.096
Rise	0.000	1.015	8.198	0.000	-0.029	-0.164
Tilt	-0.112	0.000	0.000	0.034	0.000	0.000
Roll	0.000	-0.026	-0.029	0.000	0.022	0.011
Twist	0.000	-0.096	-0.164	0.000	0.011	0.034

[Image courtesy of Curves+]

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	Mean	Stdev
-atat.10.cte	0.000	0.000

	Mean	Stdev
-catg.9.cte	0.000	0.000

	Mean	Stdev
-ccgg.8.cte	0.000	0.000

	Mean	Stdev
-cgcg.3.cte	0.000	0.000

	Mean	Stdev
-cgcg.6.cte	0.000	0.000

	Mean	Stdev
-gcgc.5.cte	0.000	0.000

	Mean	Stdev
-gcgc.7.cte	0.000	0.000

	Mean	Stdev
-ggcc.4.cte	0.000	0.000

	Mean	Stdev
-tcga.2.cte	0.000	0.000

	Mean	Stdev
rise-10-ATAT	3.299	0.272

	Mean	Stdev
roll-10-ATAT	-1.863	4.740

	Mean	Stdev
shift-10-ATAT	0.000	0.609

	Mean	Stdev
slide-10-ATAT	-0.802	0.391

	Mean	Stdev
tilt-10-ATAT	0.000	3.613

	Mean	Stdev
twist-10-ATAT	31.220	3.806

	Mean	Stdev
rise-2-TCGA	3.345	0.285

	Mean	Stdev
roll-2-TCGA	1.021	5.597

	Mean	Stdev
shift-2-TCGA	0.000	1.047

	Mean	Stdev
slide-2-TCGA	0.173	0.564

	Mean	Stdev
tilt-2-TCGA	0.000	5.414

	Mean	Stdev
twist-2-TCGA	36.557	4.956

	Mean	Stdev
rise-3-CGCG	3.061	0.318

	Mean	Stdev
roll-3-CGCG	5.794	6.495

	Mean	Stdev
shift-3-CGCG	0.000	1.058

	Mean	Stdev
slide-3-CGCG	0.171	0.566

	Mean	Stdev
tilt-3-CGCG	0.000	5.790

	Mean	Stdev
twist-3-CGCG	30.915	7.204

	Mean	Stdev
rise-4-GGCC	3.483	0.309

	Mean	Stdev
roll-4-GGCC	2.732	5.620

	Mean	Stdev
shift-4-GGCC	0.000	0.867

	Mean	Stdev
slide-4-GGCC	-0.509	0.799

	Mean	Stdev
tilt-4-GGCC	0.000	4.871

	Mean	Stdev
twist-4-GGCC	35.773	5.216

	Mean	Stdev
rise-5-GCGC	3.405	0.293

	Mean	Stdev
roll-5-GCGC	-0.439	5.107

	Mean	Stdev
shift-5-GCGC	0.000	0.785

	Mean	Stdev
slide-5-GCGC	-0.505	0.524

	Mean	Stdev
tilt-5-GCGC	0.000	4.569

	Mean	Stdev
twist-5-GCGC	33.448	5.764

	Mean	Stdev
rise-6-CGCG	3.197	0.320

	Mean	Stdev
roll-6-CGCG	6.322	6.683

	Mean	Stdev
shift-6-CGCG	0.000	1.005

	Mean	Stdev
slide-6-CGCG	0.107	0.530

	Mean	Stdev
tilt-6-CGCG	0.000	6.078

	Mean	Stdev
twist-6-CGCG	33.632	6.522

	Mean	Stdev
rise-7-GCGC	3.424	0.301

	Mean	Stdev
roll-7-GCGC	-0.950	5.185

	Mean	Stdev
shift-7-GCGC	0.000	0.785

	Mean	Stdev
slide-7-GCGC	-0.543	0.532

	Mean	Stdev
tilt-7-GCGC	0.000	4.468

	Mean	Stdev
twist-7-GCGC	34.482	5.113

	Mean	Stdev
rise-8-CCGG	3.374	0.296

	Mean	Stdev
roll-8-CCGG	3.455	5.484

	Mean	Stdev
shift-8-CCGG	0.000	1.127

	Mean	Stdev
slide-8-CCGG	-0.296	0.794

	Mean	Stdev
tilt-8-CCGG	0.000	5.262

	Mean	Stdev
twist-8-CCGG	33.988	5.618

	Mean	Stdev
rise-9-CATG	3.304	0.324

	Mean	Stdev
roll-9-CATG	7.362	6.656

	Mean	Stdev
shift-9-CATG	0.000	1.299

	Mean	Stdev
slide-9-CATG	0.009	0.556

	Mean	Stdev
tilt-9-CATG	0.000	5.956

	Mean	Stdev
twist-9-CATG	34.274	5.339

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