Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
C |
- |
T |
- |
C |
- |
T |
- |
G |
- |
G |
- |
T |
- |
C |
- |
T |
- |
C |
- |
C |
3' |
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| |
x |
| |
x |
| |
x |
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x |
| |
x |
| |
x |
| |
x |
| |
x |
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x |
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x |
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x |
| |
| 3' |
G |
- |
G |
- |
A |
- |
G |
- |
A |
- |
C |
- |
C |
- |
A |
- |
G |
- |
A |
- |
G |
- |
G |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 3.492 | 0.961 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.460 | 1.223 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 4.290 | 1.809 |
| Mean | Stdev |
| 10_H3-15_N1-10 | 1.980 | 0.127 |
| Mean | Stdev |
| 10_O4-15_H61-10 | 3.567 | 0.229 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 3.536 | 0.201 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.973 | 0.103 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 3.460 | 0.159 |
| Mean | Stdev |
| 12_H41-13_O6-12 | 3.657 | 0.607 |
| Mean | Stdev |
| 12_N3-13_H1-12 | 2.044 | 0.599 |
| Mean | Stdev |
| 12_O2-13_H21-12 | 3.567 | 0.584 |
| Mean | Stdev |
| 2_H41-23_O6-2 | 3.539 | 0.208 |
| Mean | Stdev |
| 2_N3-23_H1-2 | 2.219 | 0.648 |
| Mean | Stdev |
| 2_O2-23_H21-2 | 3.984 | 1.296 |
| Mean | Stdev |
| 3_H3-22_N1-3 | 1.981 | 0.124 |
| Mean | Stdev |
| 3_O4-22_H61-3 | 3.564 | 0.224 |
| Mean | Stdev |
| 4_H41-21_O6-4 | 3.545 | 0.209 |
| Mean | Stdev |
| 4_N3-21_H1-4 | 1.979 | 0.106 |
| Mean | Stdev |
| 4_O2-21_H21-4 | 3.448 | 0.164 |
| Mean | Stdev |
| 5_H3-20_N1-5 | 1.980 | 0.132 |
| Mean | Stdev |
| 5_O4-20_H61-5 | 3.556 | 0.208 |
| Mean | Stdev |
| 6_H1-19_N3-6 | 1.965 | 0.108 |
| Mean | Stdev |
| 6_H21-19_O2-6 | 3.431 | 0.153 |
| Mean | Stdev |
| 6_O6-19_H41-6 | 3.538 | 0.225 |
| Mean | Stdev |
| 7_H1-18_N3-7 | 1.973 | 0.095 |
| Mean | Stdev |
| 7_H21-18_O2-7 | 3.464 | 0.166 |
| Mean | Stdev |
| 7_O6-18_H41-7 | 3.538 | 0.185 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.986 | 0.128 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 3.545 | 0.208 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 3.536 | 0.192 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.970 | 0.098 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 3.456 | 0.162 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 3.4916 | 0.9611 |
| 1 | N3-H1_1-24 | 2.4602 | 1.2234 |
| 1 | O2-H21_1-24 | 4.2895 | 1.8086 |
| 2 | H41-O6_2-23 | 3.5386 | 0.2076 |
| 2 | N3-H1_2-23 | 2.2185 | 0.6480 |
| 2 | O2-H21_2-23 | 3.9839 | 1.2956 |
| 3 | H3-N1_3-22 | 1.9810 | 0.1241 |
| 3 | O4-H61_3-22 | 3.5638 | 0.2235 |
| 4 | H41-O6_4-21 | 3.5447 | 0.2092 |
| 4 | N3-H1_4-21 | 1.9793 | 0.1058 |
| 4 | O2-H21_4-21 | 3.4479 | 0.1636 |
| 5 | H3-N1_5-20 | 1.9796 | 0.1315 |
| 5 | O4-H61_5-20 | 3.5564 | 0.2082 |
| 6 | O6-H41_6-19 | 3.5385 | 0.2248 |
| 6 | H1-N3_6-19 | 1.9652 | 0.1076 |
| 6 | H21-O2_6-19 | 3.4314 | 0.1534 |
| 7 | O6-H41_7-18 | 3.5376 | 0.1846 |
| 7 | H1-N3_7-18 | 1.9729 | 0.0953 |
| 7 | H21-O2_7-18 | 3.4644 | 0.1657 |
| 8 | H3-N1_8-17 | 1.9858 | 0.1283 |
| 8 | O4-H61_8-17 | 3.5452 | 0.2079 |
| 9 | H41-O6_9-16 | 3.5364 | 0.1918 |
| 9 | N3-H1_9-16 | 1.9695 | 0.0980 |
| 9 | O2-H21_9-16 | 3.4562 | 0.1620 |
| 10 | H3-N1_10-15 | 1.9795 | 0.1273 |
| 10 | O4-H61_10-15 | 3.5674 | 0.2292 |
| 11 | H41-O6_11-14 | 3.5356 | 0.2008 |
| 11 | N3-H1_11-14 | 1.9731 | 0.1031 |
| 11 | O2-H21_11-14 | 3.4602 | 0.1594 |
| 12 | H41-O6_12-13 | 3.6574 | 0.6073 |
| 12 | N3-H1_12-13 | 2.0439 | 0.5986 |
| 12 | O2-H21_12-13 | 3.5669 | 0.5842 |
