Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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| |
x |
| |
x |
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x |
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x |
| |
x |
| |
x |
| |
x |
| |
x |
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x |
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x |
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x |
| |
| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 5.983 | 0.213 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 5.417 | 0.202 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 3.832 | 0.383 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.981 | 0.095 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.902 | 0.129 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.954 | 0.156 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.950 | 0.149 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.966 | 0.091 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.916 | 0.137 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 5.423 | 0.212 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 3.842 | 0.398 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 5.986 | 0.213 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.968 | 0.094 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.917 | 0.141 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.949 | 0.150 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.956 | 0.152 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.979 | 0.095 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.899 | 0.125 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.964 | 0.097 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.897 | 0.128 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.981 | 0.178 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 2.018 | 0.216 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.986 | 0.126 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.051 | 0.220 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.971 | 0.118 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.972 | 0.118 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.054 | 0.214 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.989 | 0.127 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 2.013 | 0.215 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.988 | 0.251 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.970 | 0.123 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.896 | 0.128 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 5.9828 | 0.2133 |
| 1 | N3-H1_1-24 | 5.4168 | 0.2015 |
| 1 | O2-H21_1-24 | 3.8321 | 0.3825 |
| 2 | O6-H41_2-23 | 1.9493 | 0.1501 |
| 2 | H1-N3_2-23 | 1.9681 | 0.0937 |
| 2 | H21-O2_2-23 | 1.9172 | 0.1408 |
| 3 | H41-O6_3-22 | 1.9557 | 0.1521 |
| 3 | N3-H1_3-22 | 1.9793 | 0.0946 |
| 3 | O2-H21_3-22 | 1.8985 | 0.1251 |
| 4 | O6-H41_4-21 | 1.9810 | 0.1779 |
| 4 | H1-N3_4-21 | 1.9637 | 0.0969 |
| 4 | H21-O2_4-21 | 1.8971 | 0.1278 |
| 5 | N1-H3_5-20 | 1.9864 | 0.1260 |
| 5 | H61-O4_5-20 | 2.0177 | 0.2158 |
| 6 | N1-H3_6-19 | 1.9711 | 0.1179 |
| 6 | H61-O4_6-19 | 2.0514 | 0.2195 |
| 7 | H3-N1_7-18 | 1.9718 | 0.1182 |
| 7 | O4-H61_7-18 | 2.0539 | 0.2136 |
| 8 | H3-N1_8-17 | 1.9886 | 0.1270 |
| 8 | O4-H61_8-17 | 2.0133 | 0.2153 |
| 9 | H41-O6_9-16 | 1.9882 | 0.2510 |
| 9 | N3-H1_9-16 | 1.9700 | 0.1226 |
| 9 | O2-H21_9-16 | 1.8957 | 0.1278 |
| 10 | O6-H41_10-15 | 1.9538 | 0.1562 |
| 10 | H1-N3_10-15 | 1.9810 | 0.0952 |
| 10 | H21-O2_10-15 | 1.9016 | 0.1294 |
| 11 | H41-O6_11-14 | 1.9499 | 0.1487 |
| 11 | N3-H1_11-14 | 1.9662 | 0.0913 |
| 11 | O2-H21_11-14 | 1.9160 | 0.1372 |
| 12 | O6-H41_12-13 | 5.9860 | 0.2130 |
| 12 | H1-N3_12-13 | 5.4230 | 0.2119 |
| 12 | H21-O2_12-13 | 3.8423 | 0.3981 |
