Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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| |
x |
| |
x |
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x |
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x |
| |
x |
| |
x |
| |
x |
| |
x |
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x |
| |
x |
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x |
| |
| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 3.009 | 2.540 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.860 | 2.262 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 2.776 | 2.185 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.975 | 0.095 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.900 | 0.122 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.954 | 0.157 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.941 | 0.148 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.968 | 0.093 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.895 | 0.128 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 2.523 | 1.948 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 2.451 | 1.845 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 2.626 | 2.214 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.967 | 0.096 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.894 | 0.125 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.947 | 0.160 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.952 | 0.154 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.973 | 0.093 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.899 | 0.123 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.966 | 0.100 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.884 | 0.121 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.973 | 0.192 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.988 | 0.192 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.992 | 0.130 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.016 | 0.195 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.974 | 0.119 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.977 | 0.121 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.015 | 0.194 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.988 | 0.127 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.986 | 0.185 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.975 | 0.204 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.969 | 0.109 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.885 | 0.123 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 3.0091 | 2.5401 |
| 1 | N3-H1_1-24 | 2.8603 | 2.2623 |
| 1 | O2-H21_1-24 | 2.7756 | 2.1851 |
| 2 | O6-H41_2-23 | 1.9466 | 0.1603 |
| 2 | H1-N3_2-23 | 1.9672 | 0.0963 |
| 2 | H21-O2_2-23 | 1.8938 | 0.1254 |
| 3 | H41-O6_3-22 | 1.9521 | 0.1543 |
| 3 | N3-H1_3-22 | 1.9727 | 0.0929 |
| 3 | O2-H21_3-22 | 1.8991 | 0.1228 |
| 4 | O6-H41_4-21 | 1.9729 | 0.1920 |
| 4 | H1-N3_4-21 | 1.9665 | 0.1000 |
| 4 | H21-O2_4-21 | 1.8840 | 0.1212 |
| 5 | N1-H3_5-20 | 1.9920 | 0.1299 |
| 5 | H61-O4_5-20 | 1.9875 | 0.1924 |
| 6 | N1-H3_6-19 | 1.9743 | 0.1195 |
| 6 | H61-O4_6-19 | 2.0159 | 0.1947 |
| 7 | H3-N1_7-18 | 1.9767 | 0.1208 |
| 7 | O4-H61_7-18 | 2.0150 | 0.1944 |
| 8 | H3-N1_8-17 | 1.9875 | 0.1267 |
| 8 | O4-H61_8-17 | 1.9857 | 0.1847 |
| 9 | H41-O6_9-16 | 1.9747 | 0.2045 |
| 9 | N3-H1_9-16 | 1.9690 | 0.1086 |
| 9 | O2-H21_9-16 | 1.8852 | 0.1228 |
| 10 | O6-H41_10-15 | 1.9538 | 0.1574 |
| 10 | H1-N3_10-15 | 1.9749 | 0.0948 |
| 10 | H21-O2_10-15 | 1.8996 | 0.1224 |
| 11 | H41-O6_11-14 | 1.9414 | 0.1483 |
| 11 | N3-H1_11-14 | 1.9677 | 0.0927 |
| 11 | O2-H21_11-14 | 1.8947 | 0.1276 |
| 12 | O6-H41_12-13 | 2.6255 | 2.2138 |
| 12 | H1-N3_12-13 | 2.5234 | 1.9482 |
| 12 | H21-O2_12-13 | 2.4507 | 1.8447 |
