Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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| |
x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 3.378 | 2.889 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 3.220 | 2.643 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 3.148 | 2.605 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.974 | 0.094 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.900 | 0.127 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.950 | 0.157 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.945 | 0.152 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.970 | 0.094 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.898 | 0.132 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 3.542 | 2.933 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 3.454 | 2.845 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 3.716 | 3.241 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.968 | 0.098 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.895 | 0.129 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.944 | 0.164 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.950 | 0.156 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.975 | 0.094 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.902 | 0.127 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.970 | 0.102 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.887 | 0.125 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.975 | 0.188 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.994 | 0.239 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 2.001 | 0.196 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.010 | 0.187 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.973 | 0.118 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.971 | 0.126 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.017 | 0.203 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.992 | 0.136 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.983 | 0.191 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.975 | 0.199 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.967 | 0.105 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.882 | 0.122 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 3.3783 | 2.8895 |
| 1 | N3-H1_1-24 | 3.2204 | 2.6425 |
| 1 | O2-H21_1-24 | 3.1479 | 2.6052 |
| 2 | O6-H41_2-23 | 1.9444 | 0.1641 |
| 2 | H1-N3_2-23 | 1.9675 | 0.0979 |
| 2 | H21-O2_2-23 | 1.8948 | 0.1285 |
| 3 | H41-O6_3-22 | 1.9502 | 0.1562 |
| 3 | N3-H1_3-22 | 1.9752 | 0.0942 |
| 3 | O2-H21_3-22 | 1.9021 | 0.1272 |
| 4 | O6-H41_4-21 | 1.9749 | 0.1876 |
| 4 | H1-N3_4-21 | 1.9695 | 0.1020 |
| 4 | H21-O2_4-21 | 1.8869 | 0.1251 |
| 5 | N1-H3_5-20 | 2.0008 | 0.1957 |
| 5 | H61-O4_5-20 | 1.9936 | 0.2392 |
| 6 | N1-H3_6-19 | 1.9730 | 0.1177 |
| 6 | H61-O4_6-19 | 2.0102 | 0.1869 |
| 7 | H3-N1_7-18 | 1.9707 | 0.1262 |
| 7 | O4-H61_7-18 | 2.0170 | 0.2030 |
| 8 | H3-N1_8-17 | 1.9925 | 0.1358 |
| 8 | O4-H61_8-17 | 1.9826 | 0.1911 |
| 9 | H41-O6_9-16 | 1.9748 | 0.1988 |
| 9 | N3-H1_9-16 | 1.9670 | 0.1055 |
| 9 | O2-H21_9-16 | 1.8824 | 0.1216 |
| 10 | O6-H41_10-15 | 1.9503 | 0.1572 |
| 10 | H1-N3_10-15 | 1.9742 | 0.0939 |
| 10 | H21-O2_10-15 | 1.9002 | 0.1272 |
| 11 | H41-O6_11-14 | 1.9447 | 0.1518 |
| 11 | N3-H1_11-14 | 1.9702 | 0.0940 |
| 11 | O2-H21_11-14 | 1.8981 | 0.1320 |
| 12 | O6-H41_12-13 | 3.7158 | 3.2406 |
| 12 | H1-N3_12-13 | 3.5419 | 2.9333 |
| 12 | H21-O2_12-13 | 3.4539 | 2.8455 |
