Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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| |
x |
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x |
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x |
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x |
| |
x |
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x |
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x |
| |
x |
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x |
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x |
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x |
| |
| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 2.684 | 1.911 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.602 | 1.826 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 2.555 | 1.867 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.975 | 0.093 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.903 | 0.127 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.952 | 0.150 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.940 | 0.142 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.966 | 0.091 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.896 | 0.125 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 2.253 | 1.217 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 2.206 | 1.237 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 2.324 | 1.314 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.967 | 0.093 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.893 | 0.122 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.947 | 0.151 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.953 | 0.153 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.974 | 0.094 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.898 | 0.126 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.966 | 0.094 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.887 | 0.122 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.968 | 0.162 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.981 | 0.172 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.986 | 0.125 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.001 | 0.177 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.974 | 0.117 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.978 | 0.119 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.005 | 0.182 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.990 | 0.129 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.981 | 0.176 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.965 | 0.152 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.967 | 0.091 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.886 | 0.123 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 2.6836 | 1.9108 |
| 1 | N3-H1_1-24 | 2.6017 | 1.8257 |
| 1 | O2-H21_1-24 | 2.5551 | 1.8666 |
| 2 | O6-H41_2-23 | 1.9469 | 0.1506 |
| 2 | H1-N3_2-23 | 1.9674 | 0.0928 |
| 2 | H21-O2_2-23 | 1.8931 | 0.1217 |
| 3 | H41-O6_3-22 | 1.9526 | 0.1535 |
| 3 | N3-H1_3-22 | 1.9737 | 0.0941 |
| 3 | O2-H21_3-22 | 1.8976 | 0.1256 |
| 4 | O6-H41_4-21 | 1.9685 | 0.1615 |
| 4 | H1-N3_4-21 | 1.9660 | 0.0938 |
| 4 | H21-O2_4-21 | 1.8874 | 0.1217 |
| 5 | N1-H3_5-20 | 1.9862 | 0.1246 |
| 5 | H61-O4_5-20 | 1.9814 | 0.1724 |
| 6 | N1-H3_6-19 | 1.9743 | 0.1169 |
| 6 | H61-O4_6-19 | 2.0010 | 0.1768 |
| 7 | H3-N1_7-18 | 1.9781 | 0.1191 |
| 7 | O4-H61_7-18 | 2.0050 | 0.1822 |
| 8 | H3-N1_8-17 | 1.9901 | 0.1286 |
| 8 | O4-H61_8-17 | 1.9810 | 0.1762 |
| 9 | H41-O6_9-16 | 1.9646 | 0.1520 |
| 9 | N3-H1_9-16 | 1.9669 | 0.0914 |
| 9 | O2-H21_9-16 | 1.8856 | 0.1235 |
| 10 | O6-H41_10-15 | 1.9524 | 0.1498 |
| 10 | H1-N3_10-15 | 1.9751 | 0.0932 |
| 10 | H21-O2_10-15 | 1.9033 | 0.1270 |
| 11 | H41-O6_11-14 | 1.9399 | 0.1421 |
| 11 | N3-H1_11-14 | 1.9662 | 0.0906 |
| 11 | O2-H21_11-14 | 1.8960 | 0.1253 |
| 12 | O6-H41_12-13 | 2.3236 | 1.3137 |
| 12 | H1-N3_12-13 | 2.2529 | 1.2173 |
| 12 | H21-O2_12-13 | 2.2059 | 1.2372 |
