Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
A |
- |
T |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 3.437 | 2.852 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 3.321 | 2.689 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 3.286 | 2.730 |
| Mean | Stdev |
| 10_H1-15_N3-10 | 1.974 | 0.097 |
| Mean | Stdev |
| 10_H21-15_O2-10 | 1.900 | 0.125 |
| Mean | Stdev |
| 10_O6-15_H41-10 | 1.954 | 0.165 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.944 | 0.156 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.969 | 0.094 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.897 | 0.129 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 3.223 | 2.650 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 3.284 | 3.027 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 3.262 | 2.607 |
| Mean | Stdev |
| 2_H1-23_N3-2 | 1.970 | 0.092 |
| Mean | Stdev |
| 2_H21-23_O2-2 | 1.894 | 0.125 |
| Mean | Stdev |
| 2_O6-23_H41-2 | 1.947 | 0.153 |
| Mean | Stdev |
| 3_H41-22_O6-3 | 1.951 | 0.151 |
| Mean | Stdev |
| 3_N3-22_H1-3 | 1.974 | 0.092 |
| Mean | Stdev |
| 3_O2-22_H21-3 | 1.897 | 0.124 |
| Mean | Stdev |
| 4_H1-21_N3-4 | 1.968 | 0.093 |
| Mean | Stdev |
| 4_H21-21_O2-4 | 1.885 | 0.121 |
| Mean | Stdev |
| 4_O6-21_H41-4 | 1.969 | 0.162 |
| Mean | Stdev |
| 5_H61-20_O4-5 | 1.981 | 0.181 |
| Mean | Stdev |
| 5_N1-20_H3-5 | 1.992 | 0.128 |
| Mean | Stdev |
| 6_H61-19_O4-6 | 2.010 | 0.190 |
| Mean | Stdev |
| 6_N1-19_H3-6 | 1.976 | 0.117 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.970 | 0.115 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.006 | 0.187 |
| Mean | Stdev |
| 8_H3-17_N1-8 | 1.993 | 0.127 |
| Mean | Stdev |
| 8_O4-17_H61-8 | 1.982 | 0.181 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.977 | 0.194 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.967 | 0.105 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.889 | 0.131 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 3.4373 | 2.8515 |
| 1 | N3-H1_1-24 | 3.3212 | 2.6894 |
| 1 | O2-H21_1-24 | 3.2856 | 2.7299 |
| 2 | O6-H41_2-23 | 1.9466 | 0.1533 |
| 2 | H1-N3_2-23 | 1.9700 | 0.0925 |
| 2 | H21-O2_2-23 | 1.8938 | 0.1246 |
| 3 | H41-O6_3-22 | 1.9512 | 0.1510 |
| 3 | N3-H1_3-22 | 1.9739 | 0.0924 |
| 3 | O2-H21_3-22 | 1.8968 | 0.1242 |
| 4 | O6-H41_4-21 | 1.9693 | 0.1617 |
| 4 | H1-N3_4-21 | 1.9677 | 0.0928 |
| 4 | H21-O2_4-21 | 1.8849 | 0.1213 |
| 5 | N1-H3_5-20 | 1.9917 | 0.1277 |
| 5 | H61-O4_5-20 | 1.9809 | 0.1806 |
| 6 | N1-H3_6-19 | 1.9760 | 0.1165 |
| 6 | H61-O4_6-19 | 2.0104 | 0.1898 |
| 7 | H3-N1_7-18 | 1.9700 | 0.1153 |
| 7 | O4-H61_7-18 | 2.0062 | 0.1867 |
| 8 | H3-N1_8-17 | 1.9926 | 0.1265 |
| 8 | O4-H61_8-17 | 1.9820 | 0.1809 |
| 9 | H41-O6_9-16 | 1.9769 | 0.1942 |
| 9 | N3-H1_9-16 | 1.9668 | 0.1052 |
| 9 | O2-H21_9-16 | 1.8885 | 0.1312 |
| 10 | O6-H41_10-15 | 1.9535 | 0.1649 |
| 10 | H1-N3_10-15 | 1.9741 | 0.0968 |
| 10 | H21-O2_10-15 | 1.8999 | 0.1249 |
| 11 | H41-O6_11-14 | 1.9440 | 0.1562 |
| 11 | N3-H1_11-14 | 1.9687 | 0.0937 |
| 11 | O2-H21_11-14 | 1.8971 | 0.1286 |
| 12 | O6-H41_12-13 | 3.2619 | 2.6075 |
| 12 | H1-N3_12-13 | 3.2231 | 2.6495 |
| 12 | H21-O2_12-13 | 3.2843 | 3.0269 |
