Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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| 5' |
C |
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A |
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A |
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T |
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T |
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T |
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T |
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C |
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C |
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T |
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C |
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G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
T |
- |
T |
- |
A |
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A |
- |
A |
- |
A |
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G |
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G |
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A |
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G |
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C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-24_O6-1 | 2.150 | 1.013 |
| Mean | Stdev |
| 1_N3-24_H1-1 | 2.120 | 0.875 |
| Mean | Stdev |
| 1_O2-24_H21-1 | 2.056 | 0.862 |
| Mean | Stdev |
| 10_H3-15_N1-10 | 1.982 | 0.126 |
| Mean | Stdev |
| 10_O4-15_H61-10 | 1.978 | 0.187 |
| Mean | Stdev |
| 11_H41-14_O6-11 | 1.982 | 0.260 |
| Mean | Stdev |
| 11_N3-14_H1-11 | 1.977 | 0.134 |
| Mean | Stdev |
| 11_O2-14_H21-11 | 1.892 | 0.135 |
| Mean | Stdev |
| 12_H1-13_N3-12 | 4.013 | 3.120 |
| Mean | Stdev |
| 12_H21-13_O2-12 | 4.031 | 3.268 |
| Mean | Stdev |
| 12_O6-13_H41-12 | 4.048 | 3.127 |
| Mean | Stdev |
| 2_H61-23_O4-2 | 2.004 | 0.192 |
| Mean | Stdev |
| 2_N1-23_H3-2 | 1.956 | 0.113 |
| Mean | Stdev |
| 3_H61-22_O4-3 | 2.023 | 0.193 |
| Mean | Stdev |
| 3_N1-22_H3-3 | 1.987 | 0.121 |
| Mean | Stdev |
| 4_H3-21_N1-4 | 1.972 | 0.115 |
| Mean | Stdev |
| 4_O4-21_H61-4 | 2.024 | 0.189 |
| Mean | Stdev |
| 5_H3-20_N1-5 | 1.969 | 0.117 |
| Mean | Stdev |
| 5_O4-20_H61-5 | 1.991 | 0.177 |
| Mean | Stdev |
| 6_H3-19_N1-6 | 1.964 | 0.116 |
| Mean | Stdev |
| 6_O4-19_H61-6 | 2.001 | 0.179 |
| Mean | Stdev |
| 7_H3-18_N1-7 | 1.976 | 0.119 |
| Mean | Stdev |
| 7_O4-18_H61-7 | 2.000 | 0.176 |
| Mean | Stdev |
| 8_H41-17_O6-8 | 1.962 | 0.162 |
| Mean | Stdev |
| 8_N3-17_H1-8 | 1.973 | 0.097 |
| Mean | Stdev |
| 8_O2-17_H21-8 | 1.911 | 0.130 |
| Mean | Stdev |
| 9_H41-16_O6-9 | 1.968 | 0.162 |
| Mean | Stdev |
| 9_N3-16_H1-9 | 1.960 | 0.091 |
| Mean | Stdev |
| 9_O2-16_H21-9 | 1.897 | 0.128 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-24 | 2.1504 | 1.0133 |
| 1 | N3-H1_1-24 | 2.1199 | 0.8752 |
| 1 | O2-H21_1-24 | 2.0556 | 0.8619 |
| 2 | N1-H3_2-23 | 1.9555 | 0.1129 |
| 2 | H61-O4_2-23 | 2.0042 | 0.1918 |
| 3 | N1-H3_3-22 | 1.9869 | 0.1210 |
| 3 | H61-O4_3-22 | 2.0226 | 0.1932 |
| 4 | H3-N1_4-21 | 1.9722 | 0.1153 |
| 4 | O4-H61_4-21 | 2.0242 | 0.1890 |
| 5 | H3-N1_5-20 | 1.9689 | 0.1170 |
| 5 | O4-H61_5-20 | 1.9909 | 0.1767 |
| 6 | H3-N1_6-19 | 1.9639 | 0.1156 |
| 6 | O4-H61_6-19 | 2.0008 | 0.1792 |
| 7 | H3-N1_7-18 | 1.9760 | 0.1193 |
| 7 | O4-H61_7-18 | 1.9995 | 0.1763 |
| 8 | H41-O6_8-17 | 1.9616 | 0.1616 |
| 8 | N3-H1_8-17 | 1.9726 | 0.0971 |
| 8 | O2-H21_8-17 | 1.9106 | 0.1296 |
| 9 | H41-O6_9-16 | 1.9684 | 0.1623 |
| 9 | N3-H1_9-16 | 1.9598 | 0.0912 |
| 9 | O2-H21_9-16 | 1.8972 | 0.1283 |
| 10 | H3-N1_10-15 | 1.9815 | 0.1262 |
| 10 | O4-H61_10-15 | 1.9779 | 0.1868 |
| 11 | H41-O6_11-14 | 1.9825 | 0.2595 |
| 11 | N3-H1_11-14 | 1.9769 | 0.1343 |
| 11 | O2-H21_11-14 | 1.8922 | 0.1347 |
| 12 | O6-H41_12-13 | 4.0484 | 3.1265 |
| 12 | H1-N3_12-13 | 4.0135 | 3.1202 |
| 12 | H21-O2_12-13 | 4.0314 | 3.2682 |
