NAFlex. Nucleic Acids Flexibility

Nucleic Acid Analysis - Stiffness Analysis

(Using Curves+ program)

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Interactive Sequence (see Help)

Average Results

Results by Time

Stiffness by Helical Parameters

Stiffness By Base Pair Step

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

Shift

Slide

Rise

Tilt

Roll

Twist

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.129	0.000	0.000	-0.111	0.000	0.000
Slide	0.000	3.361	0.984	0.000	-0.053	-0.217
Rise	0.000	0.984	9.156	0.000	-0.030	-0.177
Tilt	-0.111	0.000	0.000	0.029	0.000	0.000
Roll	0.000	-0.053	-0.030	0.000	0.023	0.006
Twist	0.000	-0.217	-0.177	0.000	0.006	0.044

[Image courtesy of Curves+]

Units:
Diagonal Shift/Slide/Rise in kcal/(mol*Å²), Diagonal Tilt/Roll/Twist in kcal/(mol*degree²)
Out of Diagonal: Shift/Slide/Rise in kcal/(mol*Å), Out of Diagonal Tilt/Roll/Twist in kcal/(mol*degree)

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	2.803	0.000	0.000	-0.023	0.000	0.000
Slide	0.000	5.324	2.665	0.000	-0.008	-0.189
Rise	0.000	2.665	11.334	0.000	0.047	-0.160
Tilt	-0.023	0.000	0.000	0.049	0.000	0.000
Roll	0.000	-0.008	0.047	0.000	0.038	0.005
Twist	0.000	-0.189	-0.160	0.000	0.005	0.072

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.006	0.000	0.000	-0.109	0.000	0.000
Slide	0.000	1.516	1.679	0.000	0.012	-0.064
Rise	0.000	1.679	7.427	0.000	-0.020	-0.168
Tilt	-0.109	0.000	0.000	0.032	0.000	0.000
Roll	0.000	0.012	-0.020	0.000	0.016	0.004
Twist	0.000	-0.064	-0.168	0.000	0.004	0.025

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.058	0.000	0.000	-0.067	0.000	0.000
Slide	0.000	2.338	1.813	0.000	-0.056	-0.106
Rise	0.000	1.813	8.030	0.000	-0.037	-0.180
Tilt	-0.067	0.000	0.000	0.032	0.000	0.000
Roll	0.000	-0.056	-0.037	0.000	0.020	0.006
Twist	0.000	-0.106	-0.180	0.000	0.006	0.027

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.720	0.000	0.000	-0.081	0.000	0.000
Slide	0.000	2.503	0.467	0.000	-0.052	-0.150
Rise	0.000	0.467	7.133	0.000	-0.046	-0.142
Tilt	-0.081	0.000	0.000	0.031	0.000	0.000
Roll	0.000	-0.052	-0.046	0.000	0.020	0.008
Twist	0.000	-0.150	-0.142	0.000	0.008	0.027

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	0.987	0.000	0.000	-0.086	0.000	0.000
Slide	0.000	2.145	1.243	0.000	-0.049	-0.111
Rise	0.000	1.243	7.923	0.000	-0.053	-0.167
Tilt	-0.086	0.000	0.000	0.034	0.000	0.000
Roll	0.000	-0.049	-0.053	0.000	0.022	0.010
Twist	0.000	-0.111	-0.167	0.000	0.010	0.024

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.842	0.000	0.000	-0.103	0.000	0.000
Slide	0.000	3.833	1.218	0.000	-0.030	-0.298
Rise	0.000	1.218	8.408	0.000	-0.046	-0.146
Tilt	-0.103	0.000	0.000	0.031	0.000	0.000
Roll	0.000	-0.030	-0.046	0.000	0.025	0.004
Twist	0.000	-0.298	-0.146	0.000	0.004	0.057

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.608	0.000	0.000	-0.074	0.000	0.000
Slide	0.000	3.120	1.173	0.000	-0.064	-0.186
Rise	0.000	1.173	7.884	0.000	-0.065	-0.165
Tilt	-0.074	0.000	0.000	0.036	0.000	0.000
Roll	0.000	-0.064	-0.065	0.000	0.025	0.008
Twist	0.000	-0.186	-0.165	0.000	0.008	0.033

[Image courtesy of Curves+]

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	Shift	Slide	Rise	Tilt	Roll	Twist
Shift	1.379	0.000	0.000	-0.069	0.000	0.000
Slide	0.000	2.569	1.357	0.000	-0.096	-0.134
Rise	0.000	1.357	7.977	0.000	-0.066	-0.185
Tilt	-0.069	0.000	0.000	0.033	0.000	0.000
Roll	0.000	-0.096	-0.066	0.000	0.025	0.009
Twist	0.000	-0.134	-0.185	0.000	0.009	0.027

[Image courtesy of Curves+]

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	Mean	Stdev
-aatt.2.cte	0.000	0.000

	Mean	Stdev
-atat.3.cte	0.000	0.000

	Mean	Stdev
-ccgg.8.cte	0.000	0.000

	Mean	Stdev
-ctag.9.cte	0.000	0.000

	Mean	Stdev
-tcga.10.cte	0.000	0.000

	Mean	Stdev
-tcga.7.cte	0.000	0.000

	Mean	Stdev
-ttaa.4.cte	0.000	0.000

	Mean	Stdev
-ttaa.5.cte	0.000	0.000

	Mean	Stdev
-ttaa.6.cte	0.000	0.000

	Mean	Stdev
rise-10-TCGA	3.293	0.304

	Mean	Stdev
roll-10-TCGA	0.847	5.776

	Mean	Stdev
shift-10-TCGA	0.000	1.070

	Mean	Stdev
slide-10-TCGA	0.170	0.594

	Mean	Stdev
tilt-10-TCGA	0.000	5.127

	Mean	Stdev
twist-10-TCGA	34.954	6.107

	Mean	Stdev
rise-2-AATT	3.315	0.264

	Mean	Stdev
roll-2-AATT	0.128	5.204

	Mean	Stdev
shift-2-AATT	0.000	0.915

	Mean	Stdev
slide-2-AATT	-0.094	0.509

	Mean	Stdev
tilt-2-AATT	0.000	5.740

	Mean	Stdev
twist-2-AATT	38.403	4.581

	Mean	Stdev
rise-3-ATAT	3.321	0.244

	Mean	Stdev
roll-3-ATAT	-2.547	3.988

	Mean	Stdev
shift-3-ATAT	0.000	0.458

	Mean	Stdev
slide-3-ATAT	-0.949	0.366

	Mean	Stdev
tilt-3-ATAT	0.000	3.471

	Mean	Stdev
twist-3-ATAT	32.629	3.023

	Mean	Stdev
rise-4-TTAA	3.351	0.272

	Mean	Stdev
roll-4-TTAA	0.050	4.857

	Mean	Stdev
shift-4-TTAA	0.000	0.625

	Mean	Stdev
slide-4-TTAA	-0.502	0.512

	Mean	Stdev
tilt-4-TTAA	0.000	4.838

	Mean	Stdev
twist-4-TTAA	37.324	4.212

	Mean	Stdev
rise-5-TTAA	3.351	0.289

	Mean	Stdev
roll-5-TTAA	0.722	5.080

	Mean	Stdev
shift-5-TTAA	0.000	0.634

	Mean	Stdev
slide-5-TTAA	-0.449	0.535

	Mean	Stdev
tilt-5-TTAA	0.000	4.265

	Mean	Stdev
twist-5-TTAA	35.226	5.425

	Mean	Stdev
rise-6-TTAA	3.284	0.298

	Mean	Stdev
roll-6-TTAA	1.532	5.409

	Mean	Stdev
shift-6-TTAA	0.000	0.689

	Mean	Stdev
slide-6-TTAA	-0.357	0.577

	Mean	Stdev
tilt-6-TTAA	0.000	4.425

	Mean	Stdev
twist-6-TTAA	34.001	5.751

	Mean	Stdev
rise-7-TCGA	3.298	0.298

	Mean	Stdev
roll-7-TCGA	2.081	5.802

	Mean	Stdev
shift-7-TCGA	0.000	0.873

	Mean	Stdev
slide-7-TCGA	-0.127	0.607

	Mean	Stdev
tilt-7-TCGA	0.000	4.692

	Mean	Stdev
twist-7-TCGA	35.033	6.458

	Mean	Stdev
rise-8-CCGG	3.506	0.338

	Mean	Stdev
roll-8-CCGG	4.024	6.214

	Mean	Stdev
shift-8-CCGG	0.000	0.964

	Mean	Stdev
slide-8-CCGG	-0.489	0.738

	Mean	Stdev
tilt-8-CCGG	0.000	5.426

	Mean	Stdev
twist-8-CCGG	34.775	5.444

	Mean	Stdev
rise-9-CTAG	3.280	0.308

	Mean	Stdev
roll-9-CTAG	2.655	5.695

	Mean	Stdev
shift-9-CTAG	0.000	0.799

	Mean	Stdev
slide-9-CTAG	-0.453	0.589

	Mean	Stdev
tilt-9-CTAG	0.000	4.575

	Mean	Stdev
twist-9-CTAG	33.211	5.413

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