Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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| 5' |
T |
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G |
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C |
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C |
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C |
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T |
- |
C |
- |
T |
- |
T |
- |
A |
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T |
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A |
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G |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
A |
- |
C |
- |
G |
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G |
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G |
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A |
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G |
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A |
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A |
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T |
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A |
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T |
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C |
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G |
5' |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H3-28_N1-1 | 4.752 | 3.216 |
| Mean | Stdev |
| 1_O4-28_H61-1 | 4.939 | 3.248 |
| Mean | Stdev |
| 10_H61-19_O4-10 | 2.024 | 0.211 |
| Mean | Stdev |
| 10_N1-19_H3-10 | 1.997 | 0.133 |
| Mean | Stdev |
| 11_H3-18_N1-11 | 1.992 | 0.128 |
| Mean | Stdev |
| 11_O4-18_H61-11 | 2.017 | 0.197 |
| Mean | Stdev |
| 12_H61-17_O4-12 | 2.055 | 0.245 |
| Mean | Stdev |
| 12_N1-17_H3-12 | 1.952 | 0.114 |
| Mean | Stdev |
| 13_H1-16_N3-13 | 1.968 | 0.093 |
| Mean | Stdev |
| 13_H21-16_O2-13 | 1.891 | 0.124 |
| Mean | Stdev |
| 13_O6-16_H41-13 | 1.993 | 0.172 |
| Mean | Stdev |
| 14_H41-15_O6-14 | 2.007 | 0.316 |
| Mean | Stdev |
| 14_N3-15_H1-14 | 2.002 | 0.178 |
| Mean | Stdev |
| 14_O2-15_H21-14 | 1.925 | 0.258 |
| Mean | Stdev |
| 2_H1-27_N3-2 | 2.073 | 0.904 |
| Mean | Stdev |
| 2_H21-27_O2-2 | 2.001 | 1.004 |
| Mean | Stdev |
| 2_O6-27_H41-2 | 2.071 | 0.928 |
| Mean | Stdev |
| 3_H41-26_O6-3 | 1.959 | 0.165 |
| Mean | Stdev |
| 3_N3-26_H1-3 | 1.973 | 0.095 |
| Mean | Stdev |
| 3_O2-26_H21-3 | 1.896 | 0.123 |
| Mean | Stdev |
| 4_H41-25_O6-4 | 1.960 | 0.158 |
| Mean | Stdev |
| 4_N3-25_H1-4 | 1.961 | 0.090 |
| Mean | Stdev |
| 4_O2-25_H21-4 | 1.884 | 0.117 |
| Mean | Stdev |
| 5_H41-24_O6-5 | 1.977 | 0.168 |
| Mean | Stdev |
| 5_N3-24_H1-5 | 1.962 | 0.092 |
| Mean | Stdev |
| 5_O2-24_H21-5 | 1.878 | 0.118 |
| Mean | Stdev |
| 6_H3-23_N1-6 | 1.971 | 0.118 |
| Mean | Stdev |
| 6_O4-23_H61-6 | 2.004 | 0.194 |
| Mean | Stdev |
| 7_H41-22_O6-7 | 1.977 | 0.171 |
| Mean | Stdev |
| 7_N3-22_H1-7 | 1.966 | 0.095 |
| Mean | Stdev |
| 7_O2-22_H21-7 | 1.902 | 0.129 |
| Mean | Stdev |
| 8_H3-21_N1-8 | 1.951 | 0.112 |
| Mean | Stdev |
| 8_O4-21_H61-8 | 2.035 | 0.222 |
| Mean | Stdev |
| 9_H3-20_N1-9 | 1.964 | 0.117 |
| Mean | Stdev |
| 9_O4-20_H61-9 | 2.033 | 0.211 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H3-N1_1-28 | 4.7518 | 3.2160 |
| 1 | O4-H61_1-28 | 4.9388 | 3.2479 |
| 2 | O6-H41_2-27 | 2.0708 | 0.9276 |
| 2 | H1-N3_2-27 | 2.0729 | 0.9040 |
| 2 | H21-O2_2-27 | 2.0008 | 1.0038 |
| 3 | H41-O6_3-26 | 1.9589 | 0.1648 |
| 3 | N3-H1_3-26 | 1.9726 | 0.0952 |
| 3 | O2-H21_3-26 | 1.8960 | 0.1235 |
| 4 | H41-O6_4-25 | 1.9599 | 0.1577 |
| 4 | N3-H1_4-25 | 1.9607 | 0.0903 |
| 4 | O2-H21_4-25 | 1.8840 | 0.1170 |
| 5 | H41-O6_5-24 | 1.9771 | 0.1684 |
| 5 | N3-H1_5-24 | 1.9616 | 0.0922 |
| 5 | O2-H21_5-24 | 1.8779 | 0.1185 |
| 6 | H3-N1_6-23 | 1.9710 | 0.1181 |
| 6 | O4-H61_6-23 | 2.0042 | 0.1941 |
| 7 | H41-O6_7-22 | 1.9768 | 0.1705 |
| 7 | N3-H1_7-22 | 1.9663 | 0.0945 |
| 7 | O2-H21_7-22 | 1.9020 | 0.1293 |
| 8 | H3-N1_8-21 | 1.9514 | 0.1115 |
| 8 | O4-H61_8-21 | 2.0349 | 0.2218 |
| 9 | H3-N1_9-20 | 1.9636 | 0.1173 |
| 9 | O4-H61_9-20 | 2.0328 | 0.2110 |
| 10 | N1-H3_10-19 | 1.9967 | 0.1328 |
| 10 | H61-O4_10-19 | 2.0239 | 0.2109 |
| 11 | H3-N1_11-18 | 1.9924 | 0.1284 |
| 11 | O4-H61_11-18 | 2.0172 | 0.1974 |
| 12 | N1-H3_12-17 | 1.9519 | 0.1144 |
| 12 | H61-O4_12-17 | 2.0548 | 0.2447 |
| 13 | O6-H41_13-16 | 1.9927 | 0.1725 |
| 13 | H1-N3_13-16 | 1.9683 | 0.0935 |
| 13 | H21-O2_13-16 | 1.8914 | 0.1240 |
| 14 | H41-O6_14-15 | 2.0067 | 0.3164 |
| 14 | N3-H1_14-15 | 2.0021 | 0.1783 |
| 14 | O2-H21_14-15 | 1.9251 | 0.2575 |
