Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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| 5' |
G |
- |
G |
- |
G |
- |
G |
- |
T |
- |
G |
- |
A |
- |
T |
- |
T |
- |
G |
- |
T |
- |
T |
- |
C |
- |
A |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
C |
- |
C |
- |
C |
- |
C |
- |
A |
- |
C |
- |
T |
- |
A |
- |
A |
- |
C |
- |
A |
- |
A |
- |
G |
- |
T |
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C |
5' |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H1-30_N3-1 | 4.096 | 2.665 |
| Mean | Stdev |
| 1_H21-30_O2-1 | 3.666 | 3.232 |
| Mean | Stdev |
| 1_O6-30_H41-1 | 5.818 | 3.533 |
| Mean | Stdev |
| 10_H1-21_N3-10 | 1.980 | 0.104 |
| Mean | Stdev |
| 10_H21-21_O2-10 | 1.882 | 0.120 |
| Mean | Stdev |
| 10_O6-21_H41-10 | 2.000 | 0.182 |
| Mean | Stdev |
| 11_H3-20_N1-11 | 1.974 | 0.119 |
| Mean | Stdev |
| 11_O4-20_H61-11 | 1.973 | 0.167 |
| Mean | Stdev |
| 12_H3-19_N1-12 | 1.988 | 0.125 |
| Mean | Stdev |
| 12_O4-19_H61-12 | 1.972 | 0.169 |
| Mean | Stdev |
| 13_H41-18_O6-13 | 1.968 | 0.159 |
| Mean | Stdev |
| 13_N3-18_H1-13 | 1.975 | 0.098 |
| Mean | Stdev |
| 13_O2-18_H21-13 | 1.889 | 0.130 |
| Mean | Stdev |
| 14_H61-17_O4-14 | 2.399 | 1.641 |
| Mean | Stdev |
| 14_N1-17_H3-14 | 2.369 | 1.675 |
| Mean | Stdev |
| 15_H1-16_N3-15 | 2.946 | 3.001 |
| Mean | Stdev |
| 15_H21-16_O2-15 | 2.912 | 3.029 |
| Mean | Stdev |
| 15_O6-16_H41-15 | 3.010 | 3.081 |
| Mean | Stdev |
| 2_H1-29_N3-2 | 2.162 | 1.116 |
| Mean | Stdev |
| 2_H21-29_O2-2 | 2.101 | 1.222 |
| Mean | Stdev |
| 2_O6-29_H41-2 | 2.174 | 1.175 |
| Mean | Stdev |
| 3_H1-28_N3-3 | 1.963 | 0.137 |
| Mean | Stdev |
| 3_H21-28_O2-3 | 1.902 | 0.152 |
| Mean | Stdev |
| 3_O6-28_H41-3 | 1.988 | 0.240 |
| Mean | Stdev |
| 4_H1-27_N3-4 | 1.970 | 0.101 |
| Mean | Stdev |
| 4_H21-27_O2-4 | 1.896 | 0.127 |
| Mean | Stdev |
| 4_O6-27_H41-4 | 1.973 | 0.171 |
| Mean | Stdev |
| 5_H3-26_N1-5 | 1.975 | 0.118 |
| Mean | Stdev |
| 5_O4-26_H61-5 | 1.963 | 0.164 |
| Mean | Stdev |
| 6_H1-25_N3-6 | 1.970 | 0.106 |
| Mean | Stdev |
| 6_H21-25_O2-6 | 1.883 | 0.120 |
| Mean | Stdev |
| 6_O6-25_H41-6 | 1.982 | 0.194 |
| Mean | Stdev |
| 7_H61-24_O4-7 | 1.981 | 0.168 |
| Mean | Stdev |
| 7_N1-24_H3-7 | 2.010 | 0.132 |
| Mean | Stdev |
| 8_H3-23_N1-8 | 1.982 | 0.119 |
| Mean | Stdev |
| 8_O4-23_H61-8 | 2.000 | 0.177 |
| Mean | Stdev |
| 9_H3-22_N1-9 | 1.961 | 0.114 |
| Mean | Stdev |
| 9_O4-22_H61-9 | 1.995 | 0.186 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | O6-H41_1-30 | 5.8176 | 3.5325 |
| 1 | H1-N3_1-30 | 4.0962 | 2.6647 |
| 1 | H21-O2_1-30 | 3.6664 | 3.2320 |
| 2 | O6-H41_2-29 | 2.1741 | 1.1751 |
| 2 | H1-N3_2-29 | 2.1620 | 1.1160 |
| 2 | H21-O2_2-29 | 2.1014 | 1.2219 |
| 3 | O6-H41_3-28 | 1.9883 | 0.2404 |
| 3 | H1-N3_3-28 | 1.9627 | 0.1373 |
| 3 | H21-O2_3-28 | 1.9022 | 0.1519 |
| 4 | O6-H41_4-27 | 1.9730 | 0.1710 |
| 4 | H1-N3_4-27 | 1.9698 | 0.1008 |
| 4 | H21-O2_4-27 | 1.8964 | 0.1270 |
| 5 | H3-N1_5-26 | 1.9753 | 0.1182 |
| 5 | O4-H61_5-26 | 1.9631 | 0.1638 |
| 6 | O6-H41_6-25 | 1.9823 | 0.1943 |
| 6 | H1-N3_6-25 | 1.9704 | 0.1064 |
| 6 | H21-O2_6-25 | 1.8832 | 0.1201 |
| 7 | N1-H3_7-24 | 2.0098 | 0.1321 |
| 7 | H61-O4_7-24 | 1.9813 | 0.1683 |
| 8 | H3-N1_8-23 | 1.9819 | 0.1188 |
| 8 | O4-H61_8-23 | 2.0002 | 0.1770 |
| 9 | H3-N1_9-22 | 1.9609 | 0.1137 |
| 9 | O4-H61_9-22 | 1.9950 | 0.1861 |
| 10 | O6-H41_10-21 | 1.9995 | 0.1821 |
| 10 | H1-N3_10-21 | 1.9800 | 0.1036 |
| 10 | H21-O2_10-21 | 1.8823 | 0.1199 |
| 11 | H3-N1_11-20 | 1.9739 | 0.1193 |
| 11 | O4-H61_11-20 | 1.9727 | 0.1665 |
| 12 | H3-N1_12-19 | 1.9881 | 0.1252 |
| 12 | O4-H61_12-19 | 1.9721 | 0.1690 |
| 13 | H41-O6_13-18 | 1.9677 | 0.1590 |
| 13 | N3-H1_13-18 | 1.9747 | 0.0983 |
| 13 | O2-H21_13-18 | 1.8894 | 0.1297 |
| 14 | N1-H3_14-17 | 2.3686 | 1.6749 |
| 14 | H61-O4_14-17 | 2.3987 | 1.6410 |
| 15 | O6-H41_15-16 | 3.0096 | 3.0810 |
| 15 | H1-N3_15-16 | 2.9457 | 3.0008 |
| 15 | H21-O2_15-16 | 2.9115 | 3.0293 |
