Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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| 5' |
C |
- |
A |
- |
C |
- |
C |
- |
C |
- |
T |
- |
T |
- |
T |
- |
G |
- |
A |
- |
A |
- |
G |
- |
C |
- |
T |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
T |
- |
G |
- |
G |
- |
G |
- |
A |
- |
A |
- |
A |
- |
C |
- |
T |
- |
T |
- |
C |
- |
G |
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A |
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G |
5' |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-30_O6-1 | 2.126 | 0.772 |
| Mean | Stdev |
| 1_N3-30_H1-1 | 2.067 | 0.603 |
| Mean | Stdev |
| 1_O2-30_H21-1 | 2.014 | 0.668 |
| Mean | Stdev |
| 10_H61-21_O4-10 | 3.546 | 0.206 |
| Mean | Stdev |
| 10_N1-21_H3-10 | 1.992 | 0.129 |
| Mean | Stdev |
| 11_H61-20_O4-11 | 3.578 | 0.215 |
| Mean | Stdev |
| 11_N1-20_H3-11 | 1.943 | 0.104 |
| Mean | Stdev |
| 12_H1-19_N3-12 | 1.959 | 0.093 |
| Mean | Stdev |
| 12_H21-19_O2-12 | 1.895 | 0.122 |
| Mean | Stdev |
| 12_O6-19_H41-12 | 1.979 | 0.166 |
| Mean | Stdev |
| 13_H41-18_O6-13 | 1.980 | 0.164 |
| Mean | Stdev |
| 13_N3-18_H1-13 | 1.956 | 0.090 |
| Mean | Stdev |
| 13_O2-18_H21-13 | 1.896 | 0.125 |
| Mean | Stdev |
| 14_H3-17_N1-14 | 1.968 | 0.116 |
| Mean | Stdev |
| 14_O4-17_H61-14 | 3.556 | 0.208 |
| Mean | Stdev |
| 15_H41-16_O6-15 | 2.083 | 0.573 |
| Mean | Stdev |
| 15_N3-16_H1-15 | 2.058 | 0.458 |
| Mean | Stdev |
| 15_O2-16_H21-15 | 1.954 | 0.457 |
| Mean | Stdev |
| 2_H61-29_O4-2 | 3.631 | 0.519 |
| Mean | Stdev |
| 2_N1-29_H3-2 | 2.123 | 0.883 |
| Mean | Stdev |
| 3_H41-28_O6-3 | 1.976 | 0.180 |
| Mean | Stdev |
| 3_N3-28_H1-3 | 1.975 | 0.102 |
| Mean | Stdev |
| 3_O2-28_H21-3 | 1.900 | 0.125 |
| Mean | Stdev |
| 4_H41-27_O6-4 | 1.965 | 0.162 |
| Mean | Stdev |
| 4_N3-27_H1-4 | 1.956 | 0.089 |
| Mean | Stdev |
| 4_O2-27_H21-4 | 1.890 | 0.121 |
| Mean | Stdev |
| 5_H41-26_O6-5 | 1.982 | 0.174 |
| Mean | Stdev |
| 5_N3-26_H1-5 | 1.960 | 0.092 |
| Mean | Stdev |
| 5_O2-26_H21-5 | 1.881 | 0.121 |
| Mean | Stdev |
| 6_H3-25_N1-6 | 1.962 | 0.207 |
| Mean | Stdev |
| 6_O4-25_H61-6 | 3.587 | 0.236 |
| Mean | Stdev |
| 7_H3-24_N1-7 | 1.973 | 0.118 |
| Mean | Stdev |
| 7_O4-24_H61-7 | 3.547 | 0.199 |
| Mean | Stdev |
| 8_H3-23_N1-8 | 1.979 | 0.129 |
| Mean | Stdev |
| 8_O4-23_H61-8 | 3.558 | 0.223 |
| Mean | Stdev |
| 9_H1-22_N3-9 | 1.978 | 0.096 |
| Mean | Stdev |
| 9_H21-22_O2-9 | 1.891 | 0.124 |
| Mean | Stdev |
| 9_O6-22_H41-9 | 1.970 | 0.156 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-30 | 2.1255 | 0.7724 |
| 1 | N3-H1_1-30 | 2.0674 | 0.6031 |
| 1 | O2-H21_1-30 | 2.0140 | 0.6681 |
| 2 | N1-H3_2-29 | 2.1235 | 0.8828 |
| 2 | H61-O4_2-29 | 3.6315 | 0.5192 |
| 3 | H41-O6_3-28 | 1.9757 | 0.1800 |
| 3 | N3-H1_3-28 | 1.9751 | 0.1018 |
| 3 | O2-H21_3-28 | 1.9001 | 0.1250 |
| 4 | H41-O6_4-27 | 1.9646 | 0.1616 |
| 4 | N3-H1_4-27 | 1.9556 | 0.0890 |
| 4 | O2-H21_4-27 | 1.8901 | 0.1209 |
| 5 | H41-O6_5-26 | 1.9824 | 0.1739 |
| 5 | N3-H1_5-26 | 1.9603 | 0.0919 |
| 5 | O2-H21_5-26 | 1.8807 | 0.1207 |
| 6 | H3-N1_6-25 | 1.9622 | 0.2072 |
| 6 | O4-H61_6-25 | 3.5873 | 0.2365 |
| 7 | H3-N1_7-24 | 1.9726 | 0.1184 |
| 7 | O4-H61_7-24 | 3.5472 | 0.1993 |
| 8 | H3-N1_8-23 | 1.9788 | 0.1285 |
| 8 | O4-H61_8-23 | 3.5584 | 0.2231 |
| 9 | O6-H41_9-22 | 1.9697 | 0.1560 |
| 9 | H1-N3_9-22 | 1.9783 | 0.0963 |
| 9 | H21-O2_9-22 | 1.8913 | 0.1242 |
| 10 | N1-H3_10-21 | 1.9922 | 0.1294 |
| 10 | H61-O4_10-21 | 3.5455 | 0.2061 |
| 11 | N1-H3_11-20 | 1.9429 | 0.1045 |
| 11 | H61-O4_11-20 | 3.5781 | 0.2148 |
| 12 | O6-H41_12-19 | 1.9792 | 0.1664 |
| 12 | H1-N3_12-19 | 1.9594 | 0.0928 |
| 12 | H21-O2_12-19 | 1.8948 | 0.1222 |
| 13 | H41-O6_13-18 | 1.9802 | 0.1637 |
| 13 | N3-H1_13-18 | 1.9562 | 0.0898 |
| 13 | O2-H21_13-18 | 1.8960 | 0.1247 |
| 14 | H3-N1_14-17 | 1.9678 | 0.1158 |
| 14 | O4-H61_14-17 | 3.5563 | 0.2080 |
| 15 | H41-O6_15-16 | 2.0831 | 0.5727 |
| 15 | N3-H1_15-16 | 2.0581 | 0.4581 |
| 15 | O2-H21_15-16 | 1.9542 | 0.4573 |
