Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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| 5' |
G |
- |
C |
- |
G |
- |
C |
- |
A |
- |
G |
- |
G |
- |
C |
- |
A |
- |
G |
- |
G |
- |
C |
- |
A |
- |
G |
- |
G |
- |
C |
- |
G |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
C |
- |
G |
- |
C |
- |
G |
- |
T |
- |
C |
- |
C |
- |
G |
- |
T |
- |
C |
- |
C |
- |
G |
- |
T |
- |
C |
- |
C |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H1-36_N3-1 | 2.028 | 0.359 |
| Mean | Stdev |
| 1_H21-36_O2-1 | 1.934 | 0.331 |
| Mean | Stdev |
| 1_O6-36_H41-1 | 2.049 | 0.563 |
| Mean | Stdev |
| 10_H1-27_N3-10 | 1.958 | 0.090 |
| Mean | Stdev |
| 10_H21-27_O2-10 | 1.894 | 0.125 |
| Mean | Stdev |
| 10_O6-27_H41-10 | 2.001 | 0.185 |
| Mean | Stdev |
| 11_H1-26_N3-11 | 1.958 | 0.092 |
| Mean | Stdev |
| 11_H21-26_O2-11 | 1.900 | 0.125 |
| Mean | Stdev |
| 11_O6-26_H41-11 | 1.949 | 0.149 |
| Mean | Stdev |
| 12_H41-25_O6-12 | 1.965 | 0.163 |
| Mean | Stdev |
| 12_N3-25_H1-12 | 1.975 | 0.096 |
| Mean | Stdev |
| 12_O2-25_H21-12 | 1.898 | 0.123 |
| Mean | Stdev |
| 13_H61-24_O4-13 | 2.017 | 0.201 |
| Mean | Stdev |
| 13_N1-24_H3-13 | 1.964 | 0.117 |
| Mean | Stdev |
| 14_H1-23_N3-14 | 1.960 | 0.094 |
| Mean | Stdev |
| 14_H21-23_O2-14 | 1.896 | 0.123 |
| Mean | Stdev |
| 14_O6-23_H41-14 | 2.003 | 0.186 |
| Mean | Stdev |
| 15_H1-22_N3-15 | 1.958 | 0.090 |
| Mean | Stdev |
| 15_H21-22_O2-15 | 1.905 | 0.128 |
| Mean | Stdev |
| 15_O6-22_H41-15 | 1.964 | 0.164 |
| Mean | Stdev |
| 16_H41-21_O6-16 | 1.969 | 0.188 |
| Mean | Stdev |
| 16_N3-21_H1-16 | 1.965 | 0.100 |
| Mean | Stdev |
| 16_O2-21_H21-16 | 1.900 | 0.123 |
| Mean | Stdev |
| 17_H1-20_N3-17 | 1.978 | 0.095 |
| Mean | Stdev |
| 17_H21-20_O2-17 | 1.904 | 0.130 |
| Mean | Stdev |
| 17_O6-20_H41-17 | 1.960 | 0.159 |
| Mean | Stdev |
| 18_H41-19_O6-18 | 2.611 | 1.839 |
| Mean | Stdev |
| 18_N3-19_H1-18 | 2.498 | 1.621 |
| Mean | Stdev |
| 18_O2-19_H21-18 | 2.561 | 1.991 |
| Mean | Stdev |
| 2_H41-35_O6-2 | 1.959 | 0.155 |
| Mean | Stdev |
| 2_N3-35_H1-2 | 1.967 | 0.090 |
| Mean | Stdev |
| 2_O2-35_H21-2 | 1.901 | 0.125 |
| Mean | Stdev |
| 3_H1-34_N3-3 | 1.963 | 0.092 |
| Mean | Stdev |
| 3_H21-34_O2-3 | 1.906 | 0.128 |
| Mean | Stdev |
| 3_O6-34_H41-3 | 1.947 | 0.152 |
| Mean | Stdev |
| 4_H41-33_O6-4 | 1.958 | 0.157 |
| Mean | Stdev |
| 4_N3-33_H1-4 | 1.975 | 0.093 |
| Mean | Stdev |
| 4_O2-33_H21-4 | 1.902 | 0.124 |
| Mean | Stdev |
| 5_H61-32_O4-5 | 2.025 | 0.230 |
| Mean | Stdev |
| 5_N1-32_H3-5 | 1.966 | 0.118 |
| Mean | Stdev |
| 6_H1-31_N3-6 | 1.956 | 0.091 |
| Mean | Stdev |
| 6_H21-31_O2-6 | 1.894 | 0.125 |
| Mean | Stdev |
| 6_O6-31_H41-6 | 2.001 | 0.184 |
| Mean | Stdev |
| 7_H1-30_N3-7 | 1.960 | 0.092 |
| Mean | Stdev |
| 7_H21-30_O2-7 | 1.904 | 0.130 |
| Mean | Stdev |
| 7_O6-30_H41-7 | 1.956 | 0.154 |
| Mean | Stdev |
| 8_H41-29_O6-8 | 1.971 | 0.160 |
| Mean | Stdev |
| 8_N3-29_H1-8 | 1.976 | 0.093 |
| Mean | Stdev |
| 8_O2-29_H21-8 | 1.900 | 0.125 |
| Mean | Stdev |
| 9_H61-28_O4-9 | 2.024 | 0.213 |
| Mean | Stdev |
| 9_N1-28_H3-9 | 1.964 | 0.116 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | O6-H41_1-36 | 2.0489 | 0.5628 |
| 1 | H1-N3_1-36 | 2.0281 | 0.3591 |
| 1 | H21-O2_1-36 | 1.9344 | 0.3313 |
| 2 | H41-O6_2-35 | 1.9586 | 0.1547 |
| 2 | N3-H1_2-35 | 1.9673 | 0.0899 |
| 2 | O2-H21_2-35 | 1.9015 | 0.1254 |
| 3 | O6-H41_3-34 | 1.9468 | 0.1518 |
| 3 | H1-N3_3-34 | 1.9626 | 0.0921 |
| 3 | H21-O2_3-34 | 1.9064 | 0.1284 |
| 4 | H41-O6_4-33 | 1.9581 | 0.1571 |
| 4 | N3-H1_4-33 | 1.9754 | 0.0929 |
| 4 | O2-H21_4-33 | 1.9017 | 0.1241 |
| 5 | N1-H3_5-32 | 1.9657 | 0.1180 |
| 5 | H61-O4_5-32 | 2.0253 | 0.2303 |
| 6 | O6-H41_6-31 | 2.0008 | 0.1841 |
| 6 | H1-N3_6-31 | 1.9562 | 0.0907 |
| 6 | H21-O2_6-31 | 1.8942 | 0.1248 |
| 7 | O6-H41_7-30 | 1.9556 | 0.1540 |
| 7 | H1-N3_7-30 | 1.9598 | 0.0919 |
| 7 | H21-O2_7-30 | 1.9038 | 0.1298 |
| 8 | H41-O6_8-29 | 1.9707 | 0.1596 |
| 8 | N3-H1_8-29 | 1.9764 | 0.0926 |
| 8 | O2-H21_8-29 | 1.9001 | 0.1252 |
| 9 | N1-H3_9-28 | 1.9645 | 0.1164 |
| 9 | H61-O4_9-28 | 2.0240 | 0.2130 |
| 10 | O6-H41_10-27 | 2.0013 | 0.1846 |
| 10 | H1-N3_10-27 | 1.9584 | 0.0900 |
| 10 | H21-O2_10-27 | 1.8941 | 0.1246 |
| 11 | O6-H41_11-26 | 1.9489 | 0.1490 |
| 11 | H1-N3_11-26 | 1.9576 | 0.0922 |
| 11 | H21-O2_11-26 | 1.8998 | 0.1254 |
| 12 | H41-O6_12-25 | 1.9647 | 0.1633 |
| 12 | N3-H1_12-25 | 1.9747 | 0.0957 |
| 12 | O2-H21_12-25 | 1.8977 | 0.1227 |
| 13 | N1-H3_13-24 | 1.9645 | 0.1175 |
| 13 | H61-O4_13-24 | 2.0167 | 0.2008 |
| 14 | O6-H41_14-23 | 2.0032 | 0.1857 |
| 14 | H1-N3_14-23 | 1.9600 | 0.0938 |
| 14 | H21-O2_14-23 | 1.8957 | 0.1233 |
| 15 | O6-H41_15-22 | 1.9642 | 0.1638 |
| 15 | H1-N3_15-22 | 1.9584 | 0.0902 |
| 15 | H21-O2_15-22 | 1.9051 | 0.1275 |
| 16 | H41-O6_16-21 | 1.9694 | 0.1876 |
| 16 | N3-H1_16-21 | 1.9650 | 0.1003 |
| 16 | O2-H21_16-21 | 1.9002 | 0.1229 |
| 17 | O6-H41_17-20 | 1.9603 | 0.1586 |
| 17 | H1-N3_17-20 | 1.9781 | 0.0952 |
| 17 | H21-O2_17-20 | 1.9043 | 0.1296 |
| 18 | H41-O6_18-19 | 2.6110 | 1.8388 |
| 18 | N3-H1_18-19 | 2.4979 | 1.6208 |
| 18 | O2-H21_18-19 | 2.5607 | 1.9908 |