Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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| 5' |
G |
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C |
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G |
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C |
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A |
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T |
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G |
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C |
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A |
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T |
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G |
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C |
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A |
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T |
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G |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
C |
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G |
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C |
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G |
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T |
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A |
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C |
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G |
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T |
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A |
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C |
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G |
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T |
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A |
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C |
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G |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H1-36_N3-1 | 7.781 | 4.499 |
| Mean | Stdev |
| 1_H21-36_O2-1 | 8.731 | 5.063 |
| Mean | Stdev |
| 1_O6-36_H41-1 | 7.830 | 4.562 |
| Mean | Stdev |
| 10_H3-27_N1-10 | 1.986 | 0.177 |
| Mean | Stdev |
| 10_O4-27_H61-10 | 2.041 | 0.253 |
| Mean | Stdev |
| 11_H1-26_N3-11 | 1.970 | 0.098 |
| Mean | Stdev |
| 11_H21-26_O2-11 | 1.897 | 0.124 |
| Mean | Stdev |
| 11_O6-26_H41-11 | 1.960 | 0.170 |
| Mean | Stdev |
| 12_H41-25_O6-12 | 1.954 | 0.155 |
| Mean | Stdev |
| 12_N3-25_H1-12 | 1.970 | 0.095 |
| Mean | Stdev |
| 12_O2-25_H21-12 | 1.901 | 0.125 |
| Mean | Stdev |
| 13_H61-24_O4-13 | 2.046 | 0.259 |
| Mean | Stdev |
| 13_N1-24_H3-13 | 1.982 | 0.169 |
| Mean | Stdev |
| 14_H3-23_N1-14 | 1.983 | 0.122 |
| Mean | Stdev |
| 14_O4-23_H61-14 | 2.025 | 0.209 |
| Mean | Stdev |
| 15_H1-22_N3-15 | 1.971 | 0.094 |
| Mean | Stdev |
| 15_H21-22_O2-15 | 1.895 | 0.123 |
| Mean | Stdev |
| 15_O6-22_H41-15 | 1.965 | 0.162 |
| Mean | Stdev |
| 16_H41-21_O6-16 | 1.948 | 0.152 |
| Mean | Stdev |
| 16_N3-21_H1-16 | 1.965 | 0.092 |
| Mean | Stdev |
| 16_O2-21_H21-16 | 1.909 | 0.134 |
| Mean | Stdev |
| 17_H1-20_N3-17 | 2.320 | 0.685 |
| Mean | Stdev |
| 17_H21-20_O2-17 | 2.157 | 0.750 |
| Mean | Stdev |
| 17_O6-20_H41-17 | 2.737 | 1.227 |
| Mean | Stdev |
| 18_H41-19_O6-18 | 6.275 | 4.890 |
| Mean | Stdev |
| 18_N3-19_H1-18 | 6.226 | 4.815 |
| Mean | Stdev |
| 18_O2-19_H21-18 | 6.833 | 5.289 |
| Mean | Stdev |
| 2_H41-35_O6-2 | 2.542 | 1.411 |
| Mean | Stdev |
| 2_N3-35_H1-2 | 2.244 | 0.915 |
| Mean | Stdev |
| 2_O2-35_H21-2 | 2.086 | 0.810 |
| Mean | Stdev |
| 3_H1-34_N3-3 | 1.969 | 0.095 |
| Mean | Stdev |
| 3_H21-34_O2-3 | 1.904 | 0.134 |
| Mean | Stdev |
| 3_O6-34_H41-3 | 1.960 | 0.157 |
| Mean | Stdev |
| 4_H41-33_O6-4 | 1.963 | 0.164 |
| Mean | Stdev |
| 4_N3-33_H1-4 | 1.972 | 0.094 |
| Mean | Stdev |
| 4_O2-33_H21-4 | 1.898 | 0.125 |
| Mean | Stdev |
| 5_H61-32_O4-5 | 2.026 | 0.218 |
| Mean | Stdev |
| 5_N1-32_H3-5 | 1.986 | 0.136 |
| Mean | Stdev |
| 6_H3-31_N1-6 | 1.979 | 0.124 |
| Mean | Stdev |
| 6_O4-31_H61-6 | 2.044 | 0.228 |
| Mean | Stdev |
| 7_H1-30_N3-7 | 1.968 | 0.098 |
| Mean | Stdev |
| 7_H21-30_O2-7 | 1.894 | 0.122 |
| Mean | Stdev |
| 7_O6-30_H41-7 | 1.960 | 0.169 |
| Mean | Stdev |
| 8_H41-29_O6-8 | 1.960 | 0.158 |
| Mean | Stdev |
| 8_N3-29_H1-8 | 1.967 | 0.093 |
| Mean | Stdev |
| 8_O2-29_H21-8 | 1.896 | 0.124 |
| Mean | Stdev |
| 9_H61-28_O4-9 | 2.045 | 0.228 |
| Mean | Stdev |
| 9_N1-28_H3-9 | 1.980 | 0.124 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | O6-H41_1-36 | 7.8303 | 4.5616 |
| 1 | H1-N3_1-36 | 7.7806 | 4.4990 |
| 1 | H21-O2_1-36 | 8.7312 | 5.0629 |
| 2 | H41-O6_2-35 | 2.5418 | 1.4114 |
| 2 | N3-H1_2-35 | 2.2438 | 0.9149 |
| 2 | O2-H21_2-35 | 2.0856 | 0.8101 |
| 3 | O6-H41_3-34 | 1.9600 | 0.1572 |
| 3 | H1-N3_3-34 | 1.9694 | 0.0949 |
| 3 | H21-O2_3-34 | 1.9037 | 0.1335 |
| 4 | H41-O6_4-33 | 1.9629 | 0.1636 |
| 4 | N3-H1_4-33 | 1.9720 | 0.0937 |
| 4 | O2-H21_4-33 | 1.8982 | 0.1248 |
| 5 | N1-H3_5-32 | 1.9857 | 0.1363 |
| 5 | H61-O4_5-32 | 2.0259 | 0.2182 |
| 6 | H3-N1_6-31 | 1.9791 | 0.1241 |
| 6 | O4-H61_6-31 | 2.0444 | 0.2278 |
| 7 | O6-H41_7-30 | 1.9603 | 0.1689 |
| 7 | H1-N3_7-30 | 1.9684 | 0.0975 |
| 7 | H21-O2_7-30 | 1.8942 | 0.1221 |
| 8 | H41-O6_8-29 | 1.9600 | 0.1578 |
| 8 | N3-H1_8-29 | 1.9673 | 0.0928 |
| 8 | O2-H21_8-29 | 1.8961 | 0.1241 |
| 9 | N1-H3_9-28 | 1.9805 | 0.1242 |
| 9 | H61-O4_9-28 | 2.0446 | 0.2276 |
| 10 | H3-N1_10-27 | 1.9863 | 0.1771 |
| 10 | O4-H61_10-27 | 2.0410 | 0.2533 |
| 11 | O6-H41_11-26 | 1.9598 | 0.1695 |
| 11 | H1-N3_11-26 | 1.9700 | 0.0976 |
| 11 | H21-O2_11-26 | 1.8974 | 0.1236 |
| 12 | H41-O6_12-25 | 1.9543 | 0.1547 |
| 12 | N3-H1_12-25 | 1.9702 | 0.0947 |
| 12 | O2-H21_12-25 | 1.9009 | 0.1246 |
| 13 | N1-H3_13-24 | 1.9825 | 0.1692 |
| 13 | H61-O4_13-24 | 2.0462 | 0.2590 |
| 14 | H3-N1_14-23 | 1.9829 | 0.1222 |
| 14 | O4-H61_14-23 | 2.0251 | 0.2093 |
| 15 | O6-H41_15-22 | 1.9646 | 0.1623 |
| 15 | H1-N3_15-22 | 1.9708 | 0.0941 |
| 15 | H21-O2_15-22 | 1.8953 | 0.1227 |
| 16 | H41-O6_16-21 | 1.9483 | 0.1521 |
| 16 | N3-H1_16-21 | 1.9654 | 0.0920 |
| 16 | O2-H21_16-21 | 1.9085 | 0.1344 |
| 17 | O6-H41_17-20 | 2.7368 | 1.2270 |
| 17 | H1-N3_17-20 | 2.3203 | 0.6852 |
| 17 | H21-O2_17-20 | 2.1574 | 0.7503 |
| 18 | H41-O6_18-19 | 6.2749 | 4.8896 |
| 18 | N3-H1_18-19 | 6.2261 | 4.8153 |
| 18 | O2-H21_18-19 | 6.8330 | 5.2887 |