Nucleic Acid Analysis - Hydrogen Bond Analysis 
	 Canonical Hydrogen Bond Distances
	
		
		
		
		
		
			|  | 1 |  | 2 |  | 3 |  | 4 |  | 5 |  | 6 |  | 7 |  | 8 |  | 9 |  | 10 |  | 11 |  | 12 |  | 13 |  | 14 |  | 15 |  | 16 |  | 17 |  | 18 |  | 
| 5' | C | - | U | - | A | - | G | - | G | - | U | - | G | - | G | - | A | - | U | - | G | - | A | - | C | - | U | - | C | - | A | - | U | - | U | 3' | 
|  | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | 
| 3' | G | - | A | - | U | - | C | - | C | - | A | - | C | - | C | - | U | - | A | - | C | - | U | - | G | - | A | - | G | - | U | - | A | - | A | 5' | 
|  | 36 |  | 35 |  | 34 |  | 33 |  | 32 |  | 31 |  | 30 |  | 29 |  | 28 |  | 27 |  | 26 |  | 25 |  | 24 |  | 23 |  | 22 |  | 21 |  | 20 |  | 19 |  | 
		
	 
        Interactive Sequence (see Help)
	
		
	
	
	
	
	
	
	
        
        
        
	
|  | Mean | Stdev | 
| 1_H41-36_O6-1 | 2.054 | 0.377 | 
|  | Mean | Stdev | 
| 1_N3-36_H1-1 | 2.000 | 0.233 | 
|  | Mean | Stdev | 
| 1_O2-36_H21-1 | 1.941 | 0.293 | 
|  | Mean | Stdev | 
| 10_H3-27_N1-10 | 1.984 | 0.132 | 
|  | Mean | Stdev | 
| 10_O4-27_H61-10 | 2.067 | 0.263 | 
|  | Mean | Stdev | 
| 11_H1-26_N3-11 | 1.967 | 0.098 | 
|  | Mean | Stdev | 
| 11_H21-26_O2-11 | 1.897 | 0.126 | 
|  | Mean | Stdev | 
| 11_O6-26_H41-11 | 1.976 | 0.174 | 
|  | Mean | Stdev | 
| 12_H61-25_O4-12 | 2.130 | 0.323 | 
|  | Mean | Stdev | 
| 12_N1-25_H3-12 | 1.988 | 0.146 | 
|  | Mean | Stdev | 
| 13_H41-24_O6-13 | 1.992 | 0.189 | 
|  | Mean | Stdev | 
| 13_N3-24_H1-13 | 1.961 | 0.097 | 
|  | Mean | Stdev | 
| 13_O2-24_H21-13 | 1.885 | 0.121 | 
|  | Mean | Stdev | 
| 14_H3-23_N1-14 | 1.976 | 0.121 | 
|  | Mean | Stdev | 
| 14_O4-23_H61-14 | 2.096 | 0.289 | 
|  | Mean | Stdev | 
| 15_H41-22_O6-15 | 1.986 | 0.178 | 
|  | Mean | Stdev | 
| 15_N3-22_H1-15 | 1.967 | 0.099 | 
|  | Mean | Stdev | 
| 15_O2-22_H21-15 | 1.898 | 0.127 | 
|  | Mean | Stdev | 
| 16_H61-21_O4-16 | 2.070 | 0.289 | 
|  | Mean | Stdev | 
| 16_N1-21_H3-16 | 1.988 | 0.150 | 
|  | Mean | Stdev | 
| 17_H3-20_N1-17 | 1.999 | 0.155 | 
|  | Mean | Stdev | 
| 17_O4-20_H61-17 | 2.072 | 0.262 | 
|  | Mean | Stdev | 
| 18_H3-19_N1-18 | 2.210 | 0.805 | 
|  | Mean | Stdev | 
| 18_O4-19_H61-18 | 2.168 | 0.830 | 
|  | Mean | Stdev | 
| 2_H3-35_N1-2 | 1.964 | 0.117 | 
|  | Mean | Stdev | 
| 2_O4-35_H61-2 | 2.095 | 0.270 | 
|  | Mean | Stdev | 
| 3_H61-34_O4-3 | 2.049 | 0.235 | 
|  | Mean | Stdev | 
| 3_N1-34_H3-3 | 1.971 | 0.119 | 
|  | Mean | Stdev | 
| 4_H1-33_N3-4 | 1.960 | 0.096 | 
|  | Mean | Stdev | 
| 4_H21-33_O2-4 | 1.880 | 0.114 | 
|  | Mean | Stdev | 
| 4_O6-33_H41-4 | 1.968 | 0.182 | 
|  | Mean | Stdev | 
| 5_H1-32_N3-5 | 1.962 | 0.092 | 
|  | Mean | Stdev | 
| 5_H21-32_O2-5 | 1.885 | 0.119 | 
|  | Mean | Stdev | 
| 5_O6-32_H41-5 | 1.981 | 0.169 | 
|  | Mean | Stdev | 
| 6_H3-31_N1-6 | 2.146 | 0.711 | 
|  | Mean | Stdev | 
| 6_O4-31_H61-6 | 2.269 | 0.759 | 
|  | Mean | Stdev | 
| 7_H1-30_N3-7 | 1.961 | 0.092 | 
|  | Mean | Stdev | 
| 7_H21-30_O2-7 | 1.886 | 0.117 | 
|  | Mean | Stdev | 
| 7_O6-30_H41-7 | 1.960 | 0.157 | 
|  | Mean | Stdev | 
| 8_H1-29_N3-8 | 1.970 | 0.099 | 
|  | Mean | Stdev | 
| 8_H21-29_O2-8 | 1.900 | 0.126 | 
|  | Mean | Stdev | 
| 8_O6-29_H41-8 | 1.978 | 0.176 | 
|  | Mean | Stdev | 
| 9_H61-28_O4-9 | 2.109 | 0.280 | 
|  | Mean | Stdev | 
| 9_N1-28_H3-9 | 1.986 | 0.133 | 
| Nucleotide Number | Hydrogen Bond | Mean | Stdev | 
| 1 | H41-O6_1-36 | 2.0536 | 0.3768 | 
| 1 | N3-H1_1-36 | 2.0001 | 0.2334 | 
| 1 | O2-H21_1-36 | 1.9406 | 0.2926 | 
| 2 | H3-N1_2-35 | 1.9638 | 0.1170 | 
| 2 | O4-H61_2-35 | 2.0955 | 0.2701 | 
| 3 | N1-H3_3-34 | 1.9709 | 0.1189 | 
| 3 | H61-O4_3-34 | 2.0490 | 0.2353 | 
| 4 | O6-H41_4-33 | 1.9685 | 0.1820 | 
| 4 | H1-N3_4-33 | 1.9598 | 0.0961 | 
| 4 | H21-O2_4-33 | 1.8800 | 0.1135 | 
| 5 | O6-H41_5-32 | 1.9814 | 0.1690 | 
| 5 | H1-N3_5-32 | 1.9615 | 0.0922 | 
| 5 | H21-O2_5-32 | 1.8846 | 0.1192 | 
| 6 | H3-N1_6-31 | 2.1458 | 0.7110 | 
| 6 | O4-H61_6-31 | 2.2689 | 0.7587 | 
| 7 | O6-H41_7-30 | 1.9605 | 0.1571 | 
| 7 | H1-N3_7-30 | 1.9610 | 0.0916 | 
| 7 | H21-O2_7-30 | 1.8864 | 0.1171 | 
| 8 | O6-H41_8-29 | 1.9782 | 0.1761 | 
| 8 | H1-N3_8-29 | 1.9701 | 0.0989 | 
| 8 | H21-O2_8-29 | 1.9002 | 0.1258 | 
| 9 | N1-H3_9-28 | 1.9860 | 0.1327 | 
| 9 | H61-O4_9-28 | 2.1087 | 0.2798 | 
| 10 | H3-N1_10-27 | 1.9843 | 0.1316 | 
| 10 | O4-H61_10-27 | 2.0666 | 0.2630 | 
| 11 | O6-H41_11-26 | 1.9764 | 0.1736 | 
| 11 | H1-N3_11-26 | 1.9674 | 0.0979 | 
| 11 | H21-O2_11-26 | 1.8965 | 0.1258 | 
| 12 | N1-H3_12-25 | 1.9880 | 0.1460 | 
| 12 | H61-O4_12-25 | 2.1296 | 0.3234 | 
| 13 | H41-O6_13-24 | 1.9923 | 0.1890 | 
| 13 | N3-H1_13-24 | 1.9607 | 0.0970 | 
| 13 | O2-H21_13-24 | 1.8852 | 0.1209 | 
| 14 | H3-N1_14-23 | 1.9758 | 0.1214 | 
| 14 | O4-H61_14-23 | 2.0963 | 0.2891 | 
| 15 | H41-O6_15-22 | 1.9857 | 0.1781 | 
| 15 | N3-H1_15-22 | 1.9670 | 0.0989 | 
| 15 | O2-H21_15-22 | 1.8982 | 0.1266 | 
| 16 | N1-H3_16-21 | 1.9881 | 0.1497 | 
| 16 | H61-O4_16-21 | 2.0695 | 0.2891 | 
| 17 | H3-N1_17-20 | 1.9989 | 0.1554 | 
| 17 | O4-H61_17-20 | 2.0720 | 0.2616 | 
| 18 | H3-N1_18-19 | 2.2097 | 0.8051 | 
| 18 | O4-H61_18-19 | 2.1682 | 0.8302 |