Nucleic Acid Analysis - Hydrogen Bond Analysis 
	 Canonical Hydrogen Bond Distances
	
		
		
		
		
		
			|  | 1 |  | 2 |  | 3 |  | 4 |  | 5 |  | 6 |  | 7 |  | 8 |  | 9 |  | 10 |  | 11 |  | 12 |  | 13 |  | 14 |  | 15 |  | 16 |  | 17 |  | 18 |  | 
| 5' | C | - | A | - | C | - | G | - | G | - | A | - | A | - | C | - | C | - | G | - | G | - | U | - | U | - | C | - | C | - | G | - | U | - | C | 3' | 
|  | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | x | | | 
| 3' | G | - | U | - | G | - | C | - | C | - | U | - | U | - | G | - | G | - | C | - | C | - | A | - | A | - | G | - | G | - | C | - | A | - | G | 5' | 
|  | 36 |  | 35 |  | 34 |  | 33 |  | 32 |  | 31 |  | 30 |  | 29 |  | 28 |  | 27 |  | 26 |  | 25 |  | 24 |  | 23 |  | 22 |  | 21 |  | 20 |  | 19 |  | 
		
	 
        Interactive Sequence (see Help)
	
		
	
	
	
	
	
	
	
        
        
        
	
|  | Mean | Stdev | 
| 1_H41-36_O6-1 | 2.047 | 0.342 | 
|  | Mean | Stdev | 
| 1_N3-36_H1-1 | 2.000 | 0.244 | 
|  | Mean | Stdev | 
| 1_O2-36_H21-1 | 1.936 | 0.270 | 
|  | Mean | Stdev | 
| 10_H1-27_N3-10 | 1.978 | 0.129 | 
|  | Mean | Stdev | 
| 10_H21-27_O2-10 | 1.882 | 0.122 | 
|  | Mean | Stdev | 
| 10_O6-27_H41-10 | 1.990 | 0.255 | 
|  | Mean | Stdev | 
| 11_H1-26_N3-11 | 1.969 | 0.100 | 
|  | Mean | Stdev | 
| 11_H21-26_O2-11 | 1.881 | 0.118 | 
|  | Mean | Stdev | 
| 11_O6-26_H41-11 | 1.984 | 0.179 | 
|  | Mean | Stdev | 
| 12_H3-25_N1-12 | 1.996 | 0.146 | 
|  | Mean | Stdev | 
| 12_O4-25_H61-12 | 2.045 | 0.267 | 
|  | Mean | Stdev | 
| 13_H3-24_N1-13 | 1.991 | 0.131 | 
|  | Mean | Stdev | 
| 13_O4-24_H61-13 | 2.102 | 0.261 | 
|  | Mean | Stdev | 
| 14_H41-23_O6-14 | 1.982 | 0.161 | 
|  | Mean | Stdev | 
| 14_N3-23_H1-14 | 1.976 | 0.093 | 
|  | Mean | Stdev | 
| 14_O2-23_H21-14 | 1.901 | 0.121 | 
|  | Mean | Stdev | 
| 15_H41-22_O6-15 | 1.966 | 0.189 | 
|  | Mean | Stdev | 
| 15_N3-22_H1-15 | 1.966 | 0.101 | 
|  | Mean | Stdev | 
| 15_O2-22_H21-15 | 1.890 | 0.122 | 
|  | Mean | Stdev | 
| 16_H1-21_N3-16 | 1.979 | 0.160 | 
|  | Mean | Stdev | 
| 16_H21-21_O2-16 | 1.875 | 0.122 | 
|  | Mean | Stdev | 
| 16_O6-21_H41-16 | 2.025 | 0.324 | 
|  | Mean | Stdev | 
| 17_H3-20_N1-17 | 1.987 | 0.139 | 
|  | Mean | Stdev | 
| 17_O4-20_H61-17 | 2.102 | 0.287 | 
|  | Mean | Stdev | 
| 18_H41-19_O6-18 | 2.008 | 0.299 | 
|  | Mean | Stdev | 
| 18_N3-19_H1-18 | 2.015 | 0.227 | 
|  | Mean | Stdev | 
| 18_O2-19_H21-18 | 1.951 | 0.323 | 
|  | Mean | Stdev | 
| 2_H61-35_O4-2 | 2.083 | 0.286 | 
|  | Mean | Stdev | 
| 2_N1-35_H3-2 | 1.976 | 0.128 | 
|  | Mean | Stdev | 
| 3_H41-34_O6-3 | 2.008 | 0.244 | 
|  | Mean | Stdev | 
| 3_N3-34_H1-3 | 1.970 | 0.120 | 
|  | Mean | Stdev | 
| 3_O2-34_H21-3 | 1.887 | 0.123 | 
|  | Mean | Stdev | 
| 4_H1-33_N3-4 | 1.965 | 0.103 | 
|  | Mean | Stdev | 
| 4_H21-33_O2-4 | 1.883 | 0.122 | 
|  | Mean | Stdev | 
| 4_O6-33_H41-4 | 1.975 | 0.202 | 
|  | Mean | Stdev | 
| 5_H1-32_N3-5 | 1.976 | 0.099 | 
|  | Mean | Stdev | 
| 5_H21-32_O2-5 | 1.903 | 0.123 | 
|  | Mean | Stdev | 
| 5_O6-32_H41-5 | 1.987 | 0.177 | 
|  | Mean | Stdev | 
| 6_H61-31_O4-6 | 2.095 | 0.251 | 
|  | Mean | Stdev | 
| 6_N1-31_H3-6 | 1.985 | 0.124 | 
|  | Mean | Stdev | 
| 7_H61-30_O4-7 | 2.054 | 0.308 | 
|  | Mean | Stdev | 
| 7_N1-30_H3-7 | 2.005 | 0.202 | 
|  | Mean | Stdev | 
| 8_H41-29_O6-8 | 1.977 | 0.163 | 
|  | Mean | Stdev | 
| 8_N3-29_H1-8 | 1.965 | 0.093 | 
|  | Mean | Stdev | 
| 8_O2-29_H21-8 | 1.880 | 0.116 | 
|  | Mean | Stdev | 
| 9_H41-28_O6-9 | 1.985 | 0.231 | 
|  | Mean | Stdev | 
| 9_N3-28_H1-9 | 1.976 | 0.117 | 
|  | Mean | Stdev | 
| 9_O2-28_H21-9 | 1.880 | 0.119 | 
| Nucleotide Number | Hydrogen Bond | Mean | Stdev | 
| 1 | H41-O6_1-36 | 2.0468 | 0.3424 | 
| 1 | N3-H1_1-36 | 2.0003 | 0.2439 | 
| 1 | O2-H21_1-36 | 1.9358 | 0.2699 | 
| 2 | N1-H3_2-35 | 1.9755 | 0.1279 | 
| 2 | H61-O4_2-35 | 2.0831 | 0.2861 | 
| 3 | H41-O6_3-34 | 2.0077 | 0.2438 | 
| 3 | N3-H1_3-34 | 1.9697 | 0.1202 | 
| 3 | O2-H21_3-34 | 1.8873 | 0.1226 | 
| 4 | O6-H41_4-33 | 1.9753 | 0.2022 | 
| 4 | H1-N3_4-33 | 1.9647 | 0.1032 | 
| 4 | H21-O2_4-33 | 1.8827 | 0.1222 | 
| 5 | O6-H41_5-32 | 1.9870 | 0.1774 | 
| 5 | H1-N3_5-32 | 1.9765 | 0.0990 | 
| 5 | H21-O2_5-32 | 1.9026 | 0.1235 | 
| 6 | N1-H3_6-31 | 1.9851 | 0.1241 | 
| 6 | H61-O4_6-31 | 2.0945 | 0.2512 | 
| 7 | N1-H3_7-30 | 2.0049 | 0.2018 | 
| 7 | H61-O4_7-30 | 2.0540 | 0.3080 | 
| 8 | H41-O6_8-29 | 1.9773 | 0.1626 | 
| 8 | N3-H1_8-29 | 1.9649 | 0.0930 | 
| 8 | O2-H21_8-29 | 1.8797 | 0.1162 | 
| 9 | H41-O6_9-28 | 1.9850 | 0.2313 | 
| 9 | N3-H1_9-28 | 1.9761 | 0.1171 | 
| 9 | O2-H21_9-28 | 1.8801 | 0.1192 | 
| 10 | O6-H41_10-27 | 1.9903 | 0.2549 | 
| 10 | H1-N3_10-27 | 1.9783 | 0.1287 | 
| 10 | H21-O2_10-27 | 1.8822 | 0.1225 | 
| 11 | O6-H41_11-26 | 1.9839 | 0.1795 | 
| 11 | H1-N3_11-26 | 1.9686 | 0.0998 | 
| 11 | H21-O2_11-26 | 1.8810 | 0.1178 | 
| 12 | H3-N1_12-25 | 1.9955 | 0.1461 | 
| 12 | O4-H61_12-25 | 2.0451 | 0.2666 | 
| 13 | H3-N1_13-24 | 1.9911 | 0.1311 | 
| 13 | O4-H61_13-24 | 2.1019 | 0.2613 | 
| 14 | H41-O6_14-23 | 1.9822 | 0.1605 | 
| 14 | N3-H1_14-23 | 1.9757 | 0.0928 | 
| 14 | O2-H21_14-23 | 1.9013 | 0.1211 | 
| 15 | H41-O6_15-22 | 1.9661 | 0.1892 | 
| 15 | N3-H1_15-22 | 1.9661 | 0.1012 | 
| 15 | O2-H21_15-22 | 1.8902 | 0.1219 | 
| 16 | O6-H41_16-21 | 2.0251 | 0.3236 | 
| 16 | H1-N3_16-21 | 1.9793 | 0.1601 | 
| 16 | H21-O2_16-21 | 1.8746 | 0.1216 | 
| 17 | H3-N1_17-20 | 1.9867 | 0.1386 | 
| 17 | O4-H61_17-20 | 2.1021 | 0.2872 | 
| 18 | H41-O6_18-19 | 2.0083 | 0.2995 | 
| 18 | N3-H1_18-19 | 2.0148 | 0.2268 | 
| 18 | O2-H21_18-19 | 1.9509 | 0.3230 |