Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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5' |
G |
- |
G |
- |
C |
- |
A |
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A |
- |
A |
- |
A |
- |
A |
- |
A |
- |
C |
- |
G |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
C |
- |
G |
- |
T |
- |
T |
- |
T |
- |
T |
- |
T |
- |
T |
- |
G |
- |
C |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-24_N3-1 | 1.995 | 0.142 |
| Mean | Stdev |
1_H21-24_O2-1 | 1.905 | 0.157 |
| Mean | Stdev |
1_O6-24_H41-1 | 2.006 | 0.258 |
| Mean | Stdev |
10_H41-15_O6-10 | 1.983 | 0.173 |
| Mean | Stdev |
10_N3-15_H1-10 | 1.979 | 0.099 |
| Mean | Stdev |
10_O2-15_H21-10 | 1.889 | 0.121 |
| Mean | Stdev |
11_H1-14_N3-11 | 1.961 | 0.096 |
| Mean | Stdev |
11_H21-14_O2-11 | 1.875 | 0.121 |
| Mean | Stdev |
11_O6-14_H41-11 | 1.971 | 0.177 |
| Mean | Stdev |
12_H1-13_N3-12 | 2.057 | 0.628 |
| Mean | Stdev |
12_H21-13_O2-12 | 2.030 | 0.646 |
| Mean | Stdev |
12_O6-13_H41-12 | 2.077 | 0.695 |
| Mean | Stdev |
2_H1-23_N3-2 | 1.968 | 0.093 |
| Mean | Stdev |
2_H21-23_O2-2 | 1.897 | 0.125 |
| Mean | Stdev |
2_O6-23_H41-2 | 1.963 | 0.157 |
| Mean | Stdev |
3_H41-22_O6-3 | 1.970 | 0.154 |
| Mean | Stdev |
3_N3-22_H1-3 | 1.974 | 0.091 |
| Mean | Stdev |
3_O2-22_H21-3 | 1.886 | 0.120 |
| Mean | Stdev |
4_H61-21_O4-4 | 2.010 | 0.200 |
| Mean | Stdev |
4_N1-21_H3-4 | 1.982 | 0.128 |
| Mean | Stdev |
5_H61-20_O4-5 | 1.994 | 0.178 |
| Mean | Stdev |
5_N1-20_H3-5 | 1.987 | 0.130 |
| Mean | Stdev |
6_H61-19_O4-6 | 1.994 | 0.181 |
| Mean | Stdev |
6_N1-19_H3-6 | 1.980 | 0.125 |
| Mean | Stdev |
7_H61-18_O4-7 | 1.999 | 0.182 |
| Mean | Stdev |
7_N1-18_H3-7 | 1.972 | 0.123 |
| Mean | Stdev |
8_H61-17_O4-8 | 1.998 | 0.185 |
| Mean | Stdev |
8_N1-17_H3-8 | 1.973 | 0.121 |
| Mean | Stdev |
9_H61-16_O4-9 | 1.997 | 0.186 |
| Mean | Stdev |
9_N1-16_H3-9 | 1.972 | 0.120 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-24 | 2.0059 | 0.2584 |
1 | H1-N3_1-24 | 1.9947 | 0.1419 |
1 | H21-O2_1-24 | 1.9055 | 0.1570 |
2 | O6-H41_2-23 | 1.9626 | 0.1570 |
2 | H1-N3_2-23 | 1.9678 | 0.0930 |
2 | H21-O2_2-23 | 1.8965 | 0.1248 |
3 | H41-O6_3-22 | 1.9699 | 0.1543 |
3 | N3-H1_3-22 | 1.9737 | 0.0915 |
3 | O2-H21_3-22 | 1.8860 | 0.1200 |
4 | N1-H3_4-21 | 1.9815 | 0.1276 |
4 | H61-O4_4-21 | 2.0105 | 0.1998 |
5 | N1-H3_5-20 | 1.9866 | 0.1295 |
5 | H61-O4_5-20 | 1.9945 | 0.1785 |
6 | N1-H3_6-19 | 1.9805 | 0.1248 |
6 | H61-O4_6-19 | 1.9945 | 0.1814 |
7 | N1-H3_7-18 | 1.9721 | 0.1228 |
7 | H61-O4_7-18 | 1.9991 | 0.1817 |
8 | N1-H3_8-17 | 1.9731 | 0.1210 |
8 | H61-O4_8-17 | 1.9980 | 0.1853 |
9 | N1-H3_9-16 | 1.9722 | 0.1198 |
9 | H61-O4_9-16 | 1.9968 | 0.1858 |
10 | H41-O6_10-15 | 1.9832 | 0.1729 |
10 | N3-H1_10-15 | 1.9794 | 0.0989 |
10 | O2-H21_10-15 | 1.8892 | 0.1213 |
11 | O6-H41_11-14 | 1.9708 | 0.1769 |
11 | H1-N3_11-14 | 1.9613 | 0.0960 |
11 | H21-O2_11-14 | 1.8752 | 0.1211 |
12 | O6-H41_12-13 | 2.0774 | 0.6945 |
12 | H1-N3_12-13 | 2.0569 | 0.6280 |
12 | H21-O2_12-13 | 2.0305 | 0.6461 |