Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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5' |
G |
- |
G |
- |
C |
- |
A |
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A |
- |
G |
- |
A |
- |
A |
- |
A |
- |
C |
- |
G |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
C |
- |
G |
- |
T |
- |
T |
- |
C |
- |
T |
- |
T |
- |
T |
- |
G |
- |
C |
- |
C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-24_N3-1 | 2.079 | 0.821 |
| Mean | Stdev |
1_H21-24_O2-1 | 2.002 | 0.947 |
| Mean | Stdev |
1_O6-24_H41-1 | 2.097 | 0.841 |
| Mean | Stdev |
10_H41-15_O6-10 | 1.988 | 0.172 |
| Mean | Stdev |
10_N3-15_H1-10 | 1.976 | 0.099 |
| Mean | Stdev |
10_O2-15_H21-10 | 1.887 | 0.117 |
| Mean | Stdev |
11_H1-14_N3-11 | 1.955 | 0.106 |
| Mean | Stdev |
11_H21-14_O2-11 | 1.869 | 0.113 |
| Mean | Stdev |
11_O6-14_H41-11 | 1.975 | 0.205 |
| Mean | Stdev |
12_H1-13_N3-12 | 2.115 | 0.913 |
| Mean | Stdev |
12_H21-13_O2-12 | 2.109 | 1.000 |
| Mean | Stdev |
12_O6-13_H41-12 | 2.139 | 0.915 |
| Mean | Stdev |
2_H1-23_N3-2 | 1.972 | 0.095 |
| Mean | Stdev |
2_H21-23_O2-2 | 1.907 | 0.139 |
| Mean | Stdev |
2_O6-23_H41-2 | 1.966 | 0.156 |
| Mean | Stdev |
3_H41-22_O6-3 | 1.973 | 0.186 |
| Mean | Stdev |
3_N3-22_H1-3 | 1.973 | 0.104 |
| Mean | Stdev |
3_O2-22_H21-3 | 1.889 | 0.123 |
| Mean | Stdev |
4_H61-21_O4-4 | 2.007 | 0.229 |
| Mean | Stdev |
4_N1-21_H3-4 | 1.971 | 0.148 |
| Mean | Stdev |
5_H61-20_O4-5 | 1.990 | 0.179 |
| Mean | Stdev |
5_N1-20_H3-5 | 1.966 | 0.120 |
| Mean | Stdev |
6_H1-19_N3-6 | 1.966 | 0.097 |
| Mean | Stdev |
6_H21-19_O2-6 | 1.903 | 0.124 |
| Mean | Stdev |
6_O6-19_H41-6 | 1.974 | 0.172 |
| Mean | Stdev |
7_H61-18_O4-7 | 2.011 | 0.216 |
| Mean | Stdev |
7_N1-18_H3-7 | 1.978 | 0.127 |
| Mean | Stdev |
8_H61-17_O4-8 | 1.989 | 0.177 |
| Mean | Stdev |
8_N1-17_H3-8 | 1.964 | 0.112 |
| Mean | Stdev |
9_H61-16_O4-9 | 1.989 | 0.182 |
| Mean | Stdev |
9_N1-16_H3-9 | 1.976 | 0.126 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-24 | 2.0968 | 0.8406 |
1 | H1-N3_1-24 | 2.0790 | 0.8206 |
1 | H21-O2_1-24 | 2.0017 | 0.9473 |
2 | O6-H41_2-23 | 1.9660 | 0.1563 |
2 | H1-N3_2-23 | 1.9717 | 0.0954 |
2 | H21-O2_2-23 | 1.9073 | 0.1389 |
3 | H41-O6_3-22 | 1.9729 | 0.1857 |
3 | N3-H1_3-22 | 1.9727 | 0.1037 |
3 | O2-H21_3-22 | 1.8885 | 0.1228 |
4 | N1-H3_4-21 | 1.9711 | 0.1478 |
4 | H61-O4_4-21 | 2.0074 | 0.2292 |
5 | N1-H3_5-20 | 1.9665 | 0.1205 |
5 | H61-O4_5-20 | 1.9900 | 0.1794 |
6 | O6-H41_6-19 | 1.9736 | 0.1716 |
6 | H1-N3_6-19 | 1.9659 | 0.0967 |
6 | H21-O2_6-19 | 1.9035 | 0.1245 |
7 | N1-H3_7-18 | 1.9782 | 0.1269 |
7 | H61-O4_7-18 | 2.0113 | 0.2157 |
8 | N1-H3_8-17 | 1.9641 | 0.1118 |
8 | H61-O4_8-17 | 1.9888 | 0.1772 |
9 | N1-H3_9-16 | 1.9761 | 0.1263 |
9 | H61-O4_9-16 | 1.9887 | 0.1825 |
10 | H41-O6_10-15 | 1.9876 | 0.1715 |
10 | N3-H1_10-15 | 1.9764 | 0.0992 |
10 | O2-H21_10-15 | 1.8867 | 0.1169 |
11 | O6-H41_11-14 | 1.9746 | 0.2049 |
11 | H1-N3_11-14 | 1.9551 | 0.1065 |
11 | H21-O2_11-14 | 1.8691 | 0.1127 |
12 | O6-H41_12-13 | 2.1391 | 0.9152 |
12 | H1-N3_12-13 | 2.1150 | 0.9132 |
12 | H21-O2_12-13 | 2.1088 | 1.0001 |