Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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| 5' |
A |
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C |
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A |
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C |
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A |
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T |
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C |
- |
C |
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T |
- |
G |
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C |
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T |
- |
A |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
T |
- |
G |
- |
T |
- |
G |
- |
T |
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A |
- |
G |
- |
G |
- |
A |
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C |
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G |
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A |
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T |
5' |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H61-26_O4-1 | 2.304 | 1.166 |
| Mean | Stdev |
| 1_N1-26_H3-1 | 2.307 | 1.117 |
| Mean | Stdev |
| 10_H1-17_N3-10 | 1.969 | 0.095 |
| Mean | Stdev |
| 10_H21-17_O2-10 | 1.895 | 0.120 |
| Mean | Stdev |
| 10_O6-17_H41-10 | 1.970 | 0.164 |
| Mean | Stdev |
| 11_H41-16_O6-11 | 1.967 | 0.159 |
| Mean | Stdev |
| 11_N3-16_H1-11 | 1.972 | 0.094 |
| Mean | Stdev |
| 11_O2-16_H21-11 | 1.916 | 0.135 |
| Mean | Stdev |
| 12_H3-15_N1-12 | 1.970 | 0.127 |
| Mean | Stdev |
| 12_O4-15_H61-12 | 2.049 | 0.241 |
| Mean | Stdev |
| 13_H61-14_O4-13 | 5.630 | 4.232 |
| Mean | Stdev |
| 13_N1-14_H3-13 | 5.425 | 3.876 |
| Mean | Stdev |
| 2_H41-25_O6-2 | 2.005 | 0.276 |
| Mean | Stdev |
| 2_N3-25_H1-2 | 1.983 | 0.129 |
| Mean | Stdev |
| 2_O2-25_H21-2 | 1.891 | 0.121 |
| Mean | Stdev |
| 3_H61-24_O4-3 | 1.975 | 0.174 |
| Mean | Stdev |
| 3_N1-24_H3-3 | 1.978 | 0.124 |
| Mean | Stdev |
| 4_H41-23_O6-4 | 1.983 | 0.176 |
| Mean | Stdev |
| 4_N3-23_H1-4 | 1.982 | 0.102 |
| Mean | Stdev |
| 4_O2-23_H21-4 | 1.877 | 0.113 |
| Mean | Stdev |
| 5_H61-22_O4-5 | 2.005 | 0.190 |
| Mean | Stdev |
| 5_N1-22_H3-5 | 1.976 | 0.120 |
| Mean | Stdev |
| 6_H3-21_N1-6 | 1.978 | 0.117 |
| Mean | Stdev |
| 6_O4-21_H61-6 | 2.018 | 0.190 |
| Mean | Stdev |
| 7_H41-20_O6-7 | 1.955 | 0.152 |
| Mean | Stdev |
| 7_N3-20_H1-7 | 1.958 | 0.090 |
| Mean | Stdev |
| 7_O2-20_H21-7 | 1.908 | 0.129 |
| Mean | Stdev |
| 8_H41-19_O6-8 | 1.982 | 0.173 |
| Mean | Stdev |
| 8_N3-19_H1-8 | 1.966 | 0.092 |
| Mean | Stdev |
| 8_O2-19_H21-8 | 1.898 | 0.127 |
| Mean | Stdev |
| 9_H3-18_N1-9 | 1.960 | 0.114 |
| Mean | Stdev |
| 9_O4-18_H61-9 | 2.008 | 0.192 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | N1-H3_1-26 | 2.3065 | 1.1175 |
| 1 | H61-O4_1-26 | 2.3042 | 1.1660 |
| 2 | H41-O6_2-25 | 2.0047 | 0.2763 |
| 2 | N3-H1_2-25 | 1.9832 | 0.1288 |
| 2 | O2-H21_2-25 | 1.8906 | 0.1206 |
| 3 | N1-H3_3-24 | 1.9777 | 0.1238 |
| 3 | H61-O4_3-24 | 1.9748 | 0.1739 |
| 4 | H41-O6_4-23 | 1.9833 | 0.1759 |
| 4 | N3-H1_4-23 | 1.9822 | 0.1016 |
| 4 | O2-H21_4-23 | 1.8774 | 0.1133 |
| 5 | N1-H3_5-22 | 1.9755 | 0.1205 |
| 5 | H61-O4_5-22 | 2.0052 | 0.1900 |
| 6 | H3-N1_6-21 | 1.9775 | 0.1174 |
| 6 | O4-H61_6-21 | 2.0181 | 0.1904 |
| 7 | H41-O6_7-20 | 1.9550 | 0.1520 |
| 7 | N3-H1_7-20 | 1.9585 | 0.0900 |
| 7 | O2-H21_7-20 | 1.9078 | 0.1289 |
| 8 | H41-O6_8-19 | 1.9821 | 0.1728 |
| 8 | N3-H1_8-19 | 1.9662 | 0.0924 |
| 8 | O2-H21_8-19 | 1.8978 | 0.1272 |
| 9 | H3-N1_9-18 | 1.9600 | 0.1139 |
| 9 | O4-H61_9-18 | 2.0076 | 0.1920 |
| 10 | O6-H41_10-17 | 1.9695 | 0.1641 |
| 10 | H1-N3_10-17 | 1.9691 | 0.0950 |
| 10 | H21-O2_10-17 | 1.8950 | 0.1197 |
| 11 | H41-O6_11-16 | 1.9668 | 0.1589 |
| 11 | N3-H1_11-16 | 1.9717 | 0.0944 |
| 11 | O2-H21_11-16 | 1.9161 | 0.1347 |
| 12 | H3-N1_12-15 | 1.9699 | 0.1273 |
| 12 | O4-H61_12-15 | 2.0493 | 0.2407 |
| 13 | N1-H3_13-14 | 5.4249 | 3.8762 |
| 13 | H61-O4_13-14 | 5.6299 | 4.2325 |
