Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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| 5' |
C |
- |
A |
- |
C |
- |
C |
- |
C |
- |
T |
- |
T |
- |
T |
- |
G |
- |
A |
- |
A |
- |
G |
- |
C |
- |
T |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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| 3' |
G |
- |
T |
- |
G |
- |
G |
- |
G |
- |
A |
- |
A |
- |
A |
- |
C |
- |
T |
- |
T |
- |
C |
- |
G |
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A |
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G |
5' |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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Interactive Sequence (see Help)
| Mean | Stdev |
| 1_H41-30_O6-1 | 2.128 | 0.758 |
| Mean | Stdev |
| 1_N3-30_H1-1 | 2.066 | 0.579 |
| Mean | Stdev |
| 1_O2-30_H21-1 | 2.010 | 0.626 |
| Mean | Stdev |
| 10_H61-21_O4-10 | 3.546 | 0.207 |
| Mean | Stdev |
| 10_N1-21_H3-10 | 1.990 | 0.125 |
| Mean | Stdev |
| 11_H61-20_O4-11 | 3.579 | 0.217 |
| Mean | Stdev |
| 11_N1-20_H3-11 | 1.944 | 0.105 |
| Mean | Stdev |
| 12_H1-19_N3-12 | 1.958 | 0.091 |
| Mean | Stdev |
| 12_H21-19_O2-12 | 1.897 | 0.125 |
| Mean | Stdev |
| 12_O6-19_H41-12 | 1.979 | 0.165 |
| Mean | Stdev |
| 13_H41-18_O6-13 | 1.980 | 0.169 |
| Mean | Stdev |
| 13_N3-18_H1-13 | 1.956 | 0.090 |
| Mean | Stdev |
| 13_O2-18_H21-13 | 1.897 | 0.125 |
| Mean | Stdev |
| 14_H3-17_N1-14 | 1.969 | 0.115 |
| Mean | Stdev |
| 14_O4-17_H61-14 | 3.556 | 0.210 |
| Mean | Stdev |
| 15_H41-16_O6-15 | 2.077 | 0.545 |
| Mean | Stdev |
| 15_N3-16_H1-15 | 2.055 | 0.430 |
| Mean | Stdev |
| 15_O2-16_H21-15 | 1.953 | 0.429 |
| Mean | Stdev |
| 2_H61-29_O4-2 | 3.625 | 0.498 |
| Mean | Stdev |
| 2_N1-29_H3-2 | 2.110 | 0.838 |
| Mean | Stdev |
| 3_H41-28_O6-3 | 1.974 | 0.172 |
| Mean | Stdev |
| 3_N3-28_H1-3 | 1.972 | 0.097 |
| Mean | Stdev |
| 3_O2-28_H21-3 | 1.898 | 0.124 |
| Mean | Stdev |
| 4_H41-27_O6-4 | 1.965 | 0.166 |
| Mean | Stdev |
| 4_N3-27_H1-4 | 1.956 | 0.091 |
| Mean | Stdev |
| 4_O2-27_H21-4 | 1.889 | 0.120 |
| Mean | Stdev |
| 5_H41-26_O6-5 | 1.980 | 0.171 |
| Mean | Stdev |
| 5_N3-26_H1-5 | 1.958 | 0.091 |
| Mean | Stdev |
| 5_O2-26_H21-5 | 1.882 | 0.121 |
| Mean | Stdev |
| 6_H3-25_N1-6 | 1.956 | 0.161 |
| Mean | Stdev |
| 6_O4-25_H61-6 | 3.586 | 0.230 |
| Mean | Stdev |
| 7_H3-24_N1-7 | 1.973 | 0.119 |
| Mean | Stdev |
| 7_O4-24_H61-7 | 3.546 | 0.196 |
| Mean | Stdev |
| 8_H3-23_N1-8 | 1.975 | 0.124 |
| Mean | Stdev |
| 8_O4-23_H61-8 | 3.555 | 0.215 |
| Mean | Stdev |
| 9_H1-22_N3-9 | 1.980 | 0.099 |
| Mean | Stdev |
| 9_H21-22_O2-9 | 1.891 | 0.123 |
| Mean | Stdev |
| 9_O6-22_H41-9 | 1.974 | 0.161 |
| Nucleotide Number | Hydrogen Bond | Mean | Stdev |
| 1 | H41-O6_1-30 | 2.1285 | 0.7578 |
| 1 | N3-H1_1-30 | 2.0660 | 0.5788 |
| 1 | O2-H21_1-30 | 2.0101 | 0.6264 |
| 2 | N1-H3_2-29 | 2.1101 | 0.8378 |
| 2 | H61-O4_2-29 | 3.6247 | 0.4984 |
| 3 | H41-O6_3-28 | 1.9739 | 0.1717 |
| 3 | N3-H1_3-28 | 1.9722 | 0.0971 |
| 3 | O2-H21_3-28 | 1.8976 | 0.1238 |
| 4 | H41-O6_4-27 | 1.9654 | 0.1664 |
| 4 | N3-H1_4-27 | 1.9556 | 0.0910 |
| 4 | O2-H21_4-27 | 1.8886 | 0.1200 |
| 5 | H41-O6_5-26 | 1.9796 | 0.1711 |
| 5 | N3-H1_5-26 | 1.9580 | 0.0911 |
| 5 | O2-H21_5-26 | 1.8818 | 0.1207 |
| 6 | H3-N1_6-25 | 1.9564 | 0.1607 |
| 6 | O4-H61_6-25 | 3.5855 | 0.2295 |
| 7 | H3-N1_7-24 | 1.9726 | 0.1187 |
| 7 | O4-H61_7-24 | 3.5460 | 0.1962 |
| 8 | H3-N1_8-23 | 1.9749 | 0.1240 |
| 8 | O4-H61_8-23 | 3.5553 | 0.2151 |
| 9 | O6-H41_9-22 | 1.9744 | 0.1614 |
| 9 | H1-N3_9-22 | 1.9803 | 0.0990 |
| 9 | H21-O2_9-22 | 1.8908 | 0.1228 |
| 10 | N1-H3_10-21 | 1.9898 | 0.1254 |
| 10 | H61-O4_10-21 | 3.5458 | 0.2068 |
| 11 | N1-H3_11-20 | 1.9441 | 0.1049 |
| 11 | H61-O4_11-20 | 3.5793 | 0.2175 |
| 12 | O6-H41_12-19 | 1.9786 | 0.1653 |
| 12 | H1-N3_12-19 | 1.9581 | 0.0909 |
| 12 | H21-O2_12-19 | 1.8970 | 0.1251 |
| 13 | H41-O6_13-18 | 1.9798 | 0.1694 |
| 13 | N3-H1_13-18 | 1.9560 | 0.0902 |
| 13 | O2-H21_13-18 | 1.8972 | 0.1251 |
| 14 | H3-N1_14-17 | 1.9687 | 0.1152 |
| 14 | O4-H61_14-17 | 3.5558 | 0.2102 |
| 15 | H41-O6_15-16 | 2.0770 | 0.5449 |
| 15 | N3-H1_15-16 | 2.0550 | 0.4299 |
| 15 | O2-H21_15-16 | 1.9534 | 0.4292 |
