Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
G |
- |
A |
- |
G |
- |
C |
- |
C |
- |
C |
- |
U |
- |
G |
- |
G |
- |
G |
- |
A |
- |
G |
- |
G |
- |
C |
- |
U |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
G |
- |
A |
- |
C |
- |
A |
- |
G |
- |
A |
- |
C |
- |
C |
- |
C |
- |
U |
- |
G |
- |
G |
- |
U |
- |
C |
- |
G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-32_N3-1 | 41.406 | 0.804 |
| Mean | Stdev |
1_H21-32_O2-1 | 42.631 | 0.901 |
| Mean | Stdev |
1_O6-32_H41-1 | 40.828 | 0.982 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.970 | 0.093 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.915 | 0.132 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.967 | 0.159 |
| Mean | Stdev |
11_H61-22_O4-11 | 2.021 | 0.223 |
| Mean | Stdev |
11_N1-22_H3-11 | 2.015 | 0.139 |
| Mean | Stdev |
16_H41-17_O6-16 | 40.554 | 1.063 |
| Mean | Stdev |
16_N3-17_H1-16 | 41.314 | 0.883 |
| Mean | Stdev |
16_O2-17_H21-16 | 42.664 | 0.959 |
| Mean | Stdev |
6_H41-27_O6-6 | 1.988 | 0.167 |
| Mean | Stdev |
6_N3-27_H1-6 | 1.994 | 0.102 |
| Mean | Stdev |
6_O2-27_H21-6 | 1.945 | 0.146 |
| Mean | Stdev |
7_H3-26_N1-7 | 2.044 | 0.172 |
| Mean | Stdev |
7_O4-26_H61-7 | 1.888 | 0.172 |
| Mean | Stdev |
8_H1-25_N3-8 | 1.955 | 0.089 |
| Mean | Stdev |
8_H21-25_O2-8 | 1.921 | 0.137 |
| Mean | Stdev |
8_O6-25_H41-8 | 1.931 | 0.146 |
| Mean | Stdev |
9_H1-24_N3-9 | 1.970 | 0.094 |
| Mean | Stdev |
9_H21-24_O2-9 | 1.914 | 0.132 |
| Mean | Stdev |
9_O6-24_H41-9 | 1.955 | 0.154 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-32 | 40.8279 | 0.9815 |
1 | H1-N3_1-32 | 41.4062 | 0.8036 |
1 | H21-O2_1-32 | 42.6312 | 0.9008 |
6 | H41-O6_6-27 | 1.9885 | 0.1669 |
6 | N3-H1_6-27 | 1.9944 | 0.1019 |
6 | O2-H21_6-27 | 1.9447 | 0.1458 |
7 | H3-N1_7-26 | 2.0436 | 0.1717 |
7 | O4-H61_7-26 | 1.8877 | 0.1718 |
8 | O6-H41_8-25 | 1.9313 | 0.1461 |
8 | H1-N3_8-25 | 1.9552 | 0.0888 |
8 | H21-O2_8-25 | 1.9205 | 0.1372 |
9 | O6-H41_9-24 | 1.9554 | 0.1537 |
9 | H1-N3_9-24 | 1.9695 | 0.0943 |
9 | H21-O2_9-24 | 1.9141 | 0.1323 |
10 | O6-H41_10-23 | 1.9673 | 0.1585 |
10 | H1-N3_10-23 | 1.9701 | 0.0933 |
10 | H21-O2_10-23 | 1.9147 | 0.1322 |
11 | N1-H3_11-22 | 2.0155 | 0.1385 |
11 | H61-O4_11-22 | 2.0207 | 0.2232 |
16 | H41-O6_16-17 | 40.5538 | 1.0633 |
16 | N3-H1_16-17 | 41.3143 | 0.8827 |
16 | O2-H21_16-17 | 42.6639 | 0.9589 |