Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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5' |
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3' |
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3' |
G |
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C |
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G |
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C |
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A |
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A |
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C |
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G |
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G |
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A |
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T |
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C |
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A |
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C |
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T |
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5' |
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72 |
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71 |
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70 |
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69 |
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68 |
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67 |
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66 |
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65 |
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64 |
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63 |
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62 |
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61 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-72_O6-1 | 2.009 | 0.209 |
| Mean | Stdev |
1_N3-72_H1-1 | 1.967 | 0.108 |
| Mean | Stdev |
1_O2-72_H21-1 | 1.939 | 0.149 |
| Mean | Stdev |
10_H41-63_O6-10 | 1.992 | 0.170 |
| Mean | Stdev |
10_N3-63_H1-10 | 1.948 | 0.089 |
| Mean | Stdev |
10_O2-63_H21-10 | 1.893 | 0.120 |
| Mean | Stdev |
11_H3-62_N1-11 | 1.968 | 0.123 |
| Mean | Stdev |
11_O4-62_H61-11 | 2.038 | 0.240 |
| Mean | Stdev |
12_H61-61_O4-12 | 2.010 | 0.193 |
| Mean | Stdev |
12_N1-61_H3-12 | 1.957 | 0.116 |
| Mean | Stdev |
13_H61-60_O4-13 | 1.984 | 0.180 |
| Mean | Stdev |
13_N1-60_H3-13 | 1.973 | 0.120 |
| Mean | Stdev |
14_H41-59_O6-14 | 1.982 | 0.154 |
| Mean | Stdev |
14_N3-59_H1-14 | 1.959 | 0.094 |
| Mean | Stdev |
14_O2-59_H21-14 | 1.904 | 0.130 |
| Mean | Stdev |
15_H1-58_N3-15 | 1.946 | 0.086 |
| Mean | Stdev |
15_H21-58_O2-15 | 1.875 | 0.119 |
| Mean | Stdev |
15_O6-58_H41-15 | 1.980 | 0.156 |
| Mean | Stdev |
16_H61-57_O4-16 | 2.005 | 0.188 |
| Mean | Stdev |
16_N1-57_H3-16 | 1.958 | 0.112 |
| Mean | Stdev |
17_H1-56_N3-17 | 1.965 | 0.097 |
| Mean | Stdev |
17_H21-56_O2-17 | 1.928 | 0.138 |
| Mean | Stdev |
17_O6-56_H41-17 | 1.994 | 0.171 |
| Mean | Stdev |
18_H3-55_N1-18 | 1.959 | 0.115 |
| Mean | Stdev |
18_O4-55_H61-18 | 2.008 | 0.191 |
| Mean | Stdev |
19_H61-54_O4-19 | 2.027 | 0.223 |
| Mean | Stdev |
19_N1-54_H3-19 | 1.966 | 0.119 |
| Mean | Stdev |
2_H1-71_N3-2 | 1.951 | 0.087 |
| Mean | Stdev |
2_H21-71_O2-2 | 1.895 | 0.125 |
| Mean | Stdev |
2_O6-71_H41-2 | 1.951 | 0.148 |
| Mean | Stdev |
20_H41-53_O6-20 | 2.006 | 0.186 |
| Mean | Stdev |
20_N3-53_H1-20 | 1.966 | 0.104 |
| Mean | Stdev |
20_O2-53_H21-20 | 1.929 | 0.137 |
| Mean | Stdev |
21_H3-52_N1-21 | 1.971 | 0.117 |
| Mean | Stdev |
21_O4-52_H61-21 | 1.984 | 0.180 |
| Mean | Stdev |
22_H41-51_O6-22 | 1.981 | 0.161 |
| Mean | Stdev |
22_N3-51_H1-22 | 1.949 | 0.088 |
| Mean | Stdev |
22_O2-51_H21-22 | 1.864 | 0.111 |
| Mean | Stdev |
23_H1-50_N3-23 | 1.967 | 0.096 |
| Mean | Stdev |
23_H21-50_O2-23 | 1.914 | 0.129 |
| Mean | Stdev |
23_O6-50_H41-23 | 1.983 | 0.162 |
| Mean | Stdev |
24_H3-49_N1-24 | 1.969 | 0.119 |
| Mean | Stdev |
24_O4-49_H61-24 | 1.996 | 0.184 |
| Mean | Stdev |
25_H3-48_N1-25 | 1.950 | 0.109 |
| Mean | Stdev |
25_O4-48_H61-25 | 2.046 | 0.223 |
| Mean | Stdev |
26_H61-47_O4-26 | 2.003 | 0.213 |
| Mean | Stdev |
26_N1-47_H3-26 | 1.981 | 0.130 |
| Mean | Stdev |
27_H1-46_N3-27 | 1.948 | 0.089 |
| Mean | Stdev |
27_H21-46_O2-27 | 1.887 | 0.120 |
| Mean | Stdev |
27_O6-46_H41-27 | 1.994 | 0.171 |
| Mean | Stdev |
28_H1-45_N3-28 | 1.958 | 0.089 |
| Mean | Stdev |
28_H21-45_O2-28 | 1.911 | 0.126 |
| Mean | Stdev |
28_O6-45_H41-28 | 1.978 | 0.163 |
| Mean | Stdev |
29_H41-44_O6-29 | 1.984 | 0.161 |
| Mean | Stdev |
29_N3-44_H1-29 | 1.960 | 0.091 |
| Mean | Stdev |
29_O2-44_H21-29 | 1.891 | 0.122 |
| Mean | Stdev |
3_H41-70_O6-3 | 1.953 | 0.146 |
| Mean | Stdev |
3_N3-70_H1-3 | 1.961 | 0.090 |
| Mean | Stdev |
3_O2-70_H21-3 | 1.907 | 0.125 |
| Mean | Stdev |
30_H61-43_O4-30 | 2.008 | 0.263 |
| Mean | Stdev |
30_N1-43_H3-30 | 1.957 | 0.131 |
| Mean | Stdev |
31_H61-42_O4-31 | 1.983 | 0.168 |
| Mean | Stdev |
31_N1-42_H3-31 | 1.990 | 0.121 |
| Mean | Stdev |
32_H3-41_N1-32 | 2.000 | 0.124 |
| Mean | Stdev |
32_O4-41_H61-32 | 1.974 | 0.167 |
| Mean | Stdev |
33_H41-40_O6-33 | 1.982 | 0.160 |
| Mean | Stdev |
33_N3-40_H1-33 | 1.947 | 0.088 |
| Mean | Stdev |
33_O2-40_H21-33 | 1.890 | 0.121 |
| Mean | Stdev |
34_H1-39_N3-34 | 1.965 | 0.094 |
| Mean | Stdev |
34_H21-39_O2-34 | 1.913 | 0.131 |
| Mean | Stdev |
34_O6-39_H41-34 | 1.958 | 0.153 |
| Mean | Stdev |
35_H41-38_O6-35 | 1.953 | 0.152 |
| Mean | Stdev |
35_N3-38_H1-35 | 1.956 | 0.091 |
| Mean | Stdev |
35_O2-38_H21-35 | 1.908 | 0.132 |
| Mean | Stdev |
36_H1-37_N3-36 | 3.354 | 2.700 |
| Mean | Stdev |
36_H21-37_O2-36 | 3.374 | 2.783 |
| Mean | Stdev |
36_O6-37_H41-36 | 3.376 | 2.660 |
| Mean | Stdev |
4_H1-69_N3-4 | 1.944 | 0.087 |
| Mean | Stdev |
4_H21-69_O2-4 | 1.878 | 0.114 |
| Mean | Stdev |
4_O6-69_H41-4 | 1.978 | 0.161 |
| Mean | Stdev |
5_H61-68_O4-5 | 1.979 | 0.172 |
| Mean | Stdev |
5_N1-68_H3-5 | 1.994 | 0.122 |
| Mean | Stdev |
6_H3-67_N1-6 | 1.993 | 0.123 |
| Mean | Stdev |
6_O4-67_H61-6 | 1.981 | 0.168 |
| Mean | Stdev |
7_H3-66_N1-7 | 1.958 | 0.112 |
| Mean | Stdev |
7_O4-66_H61-7 | 2.004 | 0.187 |
| Mean | Stdev |
8_H1-65_N3-8 | 1.962 | 0.095 |
| Mean | Stdev |
8_H21-65_O2-8 | 1.892 | 0.125 |
| Mean | Stdev |
8_O6-65_H41-8 | 1.988 | 0.169 |
| Mean | Stdev |
9_H41-64_O6-9 | 1.965 | 0.158 |
| Mean | Stdev |
9_N3-64_H1-9 | 1.953 | 0.091 |
| Mean | Stdev |
9_O2-64_H21-9 | 1.912 | 0.128 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-72 | 2.0093 | 0.2091 |
1 | N3-H1_1-72 | 1.9669 | 0.1078 |
1 | O2-H21_1-72 | 1.9390 | 0.1489 |
2 | O6-H41_2-71 | 1.9506 | 0.1477 |
2 | H1-N3_2-71 | 1.9510 | 0.0868 |
2 | H21-O2_2-71 | 1.8952 | 0.1251 |
3 | H41-O6_3-70 | 1.9529 | 0.1463 |
3 | N3-H1_3-70 | 1.9613 | 0.0899 |
3 | O2-H21_3-70 | 1.9068 | 0.1250 |
4 | O6-H41_4-69 | 1.9780 | 0.1609 |
4 | H1-N3_4-69 | 1.9440 | 0.0869 |
4 | H21-O2_4-69 | 1.8776 | 0.1135 |
5 | N1-H3_5-68 | 1.9942 | 0.1224 |
5 | H61-O4_5-68 | 1.9787 | 0.1725 |
6 | H3-N1_6-67 | 1.9929 | 0.1229 |
6 | O4-H61_6-67 | 1.9812 | 0.1680 |
7 | H3-N1_7-66 | 1.9575 | 0.1115 |
7 | O4-H61_7-66 | 2.0043 | 0.1872 |
8 | O6-H41_8-65 | 1.9884 | 0.1687 |
8 | H1-N3_8-65 | 1.9617 | 0.0946 |
8 | H21-O2_8-65 | 1.8919 | 0.1249 |
9 | H41-O6_9-64 | 1.9654 | 0.1580 |
9 | N3-H1_9-64 | 1.9530 | 0.0908 |
9 | O2-H21_9-64 | 1.9122 | 0.1275 |
10 | H41-O6_10-63 | 1.9922 | 0.1704 |
10 | N3-H1_10-63 | 1.9479 | 0.0895 |
10 | O2-H21_10-63 | 1.8930 | 0.1199 |
11 | H3-N1_11-62 | 1.9681 | 0.1234 |
11 | O4-H61_11-62 | 2.0377 | 0.2403 |
12 | N1-H3_12-61 | 1.9574 | 0.1160 |
12 | H61-O4_12-61 | 2.0104 | 0.1926 |
13 | N1-H3_13-60 | 1.9729 | 0.1203 |
13 | H61-O4_13-60 | 1.9837 | 0.1805 |
14 | H41-O6_14-59 | 1.9822 | 0.1542 |
14 | N3-H1_14-59 | 1.9586 | 0.0940 |
14 | O2-H21_14-59 | 1.9036 | 0.1295 |
15 | O6-H41_15-58 | 1.9799 | 0.1560 |
15 | H1-N3_15-58 | 1.9464 | 0.0861 |
15 | H21-O2_15-58 | 1.8752 | 0.1195 |
16 | N1-H3_16-57 | 1.9576 | 0.1123 |
16 | H61-O4_16-57 | 2.0047 | 0.1883 |
17 | O6-H41_17-56 | 1.9935 | 0.1706 |
17 | H1-N3_17-56 | 1.9648 | 0.0974 |
17 | H21-O2_17-56 | 1.9278 | 0.1383 |
18 | H3-N1_18-55 | 1.9590 | 0.1149 |
18 | O4-H61_18-55 | 2.0080 | 0.1909 |
19 | N1-H3_19-54 | 1.9657 | 0.1195 |
19 | H61-O4_19-54 | 2.0273 | 0.2232 |
20 | H41-O6_20-53 | 2.0060 | 0.1859 |
20 | N3-H1_20-53 | 1.9663 | 0.1044 |
20 | O2-H21_20-53 | 1.9286 | 0.1365 |
21 | H3-N1_21-52 | 1.9712 | 0.1172 |
21 | O4-H61_21-52 | 1.9839 | 0.1805 |
22 | H41-O6_22-51 | 1.9813 | 0.1606 |
22 | N3-H1_22-51 | 1.9491 | 0.0880 |
22 | O2-H21_22-51 | 1.8640 | 0.1105 |
23 | O6-H41_23-50 | 1.9826 | 0.1624 |
23 | H1-N3_23-50 | 1.9669 | 0.0955 |
23 | H21-O2_23-50 | 1.9138 | 0.1288 |
24 | H3-N1_24-49 | 1.9694 | 0.1195 |
24 | O4-H61_24-49 | 1.9955 | 0.1838 |
25 | H3-N1_25-48 | 1.9499 | 0.1090 |
25 | O4-H61_25-48 | 2.0464 | 0.2234 |
26 | N1-H3_26-47 | 1.9806 | 0.1302 |
26 | H61-O4_26-47 | 2.0027 | 0.2131 |
27 | O6-H41_27-46 | 1.9936 | 0.1710 |
27 | H1-N3_27-46 | 1.9475 | 0.0892 |
27 | H21-O2_27-46 | 1.8869 | 0.1198 |
28 | O6-H41_28-45 | 1.9784 | 0.1626 |
28 | H1-N3_28-45 | 1.9575 | 0.0895 |
28 | H21-O2_28-45 | 1.9113 | 0.1260 |
29 | H41-O6_29-44 | 1.9843 | 0.1605 |
29 | N3-H1_29-44 | 1.9595 | 0.0912 |
29 | O2-H21_29-44 | 1.8913 | 0.1216 |
30 | N1-H3_30-43 | 1.9573 | 0.1314 |
30 | H61-O4_30-43 | 2.0081 | 0.2628 |
31 | N1-H3_31-42 | 1.9899 | 0.1211 |
31 | H61-O4_31-42 | 1.9828 | 0.1683 |
32 | H3-N1_32-41 | 2.0002 | 0.1241 |
32 | O4-H61_32-41 | 1.9735 | 0.1670 |
33 | H41-O6_33-40 | 1.9815 | 0.1601 |
33 | N3-H1_33-40 | 1.9468 | 0.0884 |
33 | O2-H21_33-40 | 1.8897 | 0.1211 |
34 | O6-H41_34-39 | 1.9579 | 0.1531 |
34 | H1-N3_34-39 | 1.9653 | 0.0940 |
34 | H21-O2_34-39 | 1.9131 | 0.1306 |
35 | H41-O6_35-38 | 1.9528 | 0.1519 |
35 | N3-H1_35-38 | 1.9559 | 0.0911 |
35 | O2-H21_35-38 | 1.9076 | 0.1320 |
36 | O6-H41_36-37 | 3.3764 | 2.6597 |
36 | H1-N3_36-37 | 3.3544 | 2.7002 |
36 | H21-O2_36-37 | 3.3736 | 2.7825 |