Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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5' |
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3' |
G |
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C |
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A |
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G |
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5' |
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72 |
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69 |
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66 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-72_O6-1 | 2.276 | 1.197 |
| Mean | Stdev |
1_N3-72_H1-1 | 2.169 | 0.962 |
| Mean | Stdev |
1_O2-72_H21-1 | 2.121 | 0.876 |
| Mean | Stdev |
10_H41-63_O6-10 | 1.991 | 0.172 |
| Mean | Stdev |
10_N3-63_H1-10 | 1.946 | 0.088 |
| Mean | Stdev |
10_O2-63_H21-10 | 1.885 | 0.118 |
| Mean | Stdev |
11_H3-62_N1-11 | 1.969 | 0.128 |
| Mean | Stdev |
11_O4-62_H61-11 | 2.020 | 0.236 |
| Mean | Stdev |
12_H61-61_O4-12 | 2.017 | 0.205 |
| Mean | Stdev |
12_N1-61_H3-12 | 1.968 | 0.122 |
| Mean | Stdev |
13_H61-60_O4-13 | 1.988 | 0.176 |
| Mean | Stdev |
13_N1-60_H3-13 | 1.969 | 0.116 |
| Mean | Stdev |
14_H41-59_O6-14 | 1.983 | 0.217 |
| Mean | Stdev |
14_N3-59_H1-14 | 1.960 | 0.115 |
| Mean | Stdev |
14_O2-59_H21-14 | 1.896 | 0.127 |
| Mean | Stdev |
15_H1-58_N3-15 | 1.950 | 0.089 |
| Mean | Stdev |
15_H21-58_O2-15 | 1.875 | 0.117 |
| Mean | Stdev |
15_O6-58_H41-15 | 1.980 | 0.168 |
| Mean | Stdev |
16_H61-57_O4-16 | 2.004 | 0.197 |
| Mean | Stdev |
16_N1-57_H3-16 | 1.958 | 0.118 |
| Mean | Stdev |
17_H1-56_N3-17 | 1.953 | 0.100 |
| Mean | Stdev |
17_H21-56_O2-17 | 1.908 | 0.131 |
| Mean | Stdev |
17_O6-56_H41-17 | 2.005 | 0.182 |
| Mean | Stdev |
18_H3-55_N1-18 | 1.977 | 0.165 |
| Mean | Stdev |
18_O4-55_H61-18 | 2.036 | 0.334 |
| Mean | Stdev |
19_H61-54_O4-19 | 2.010 | 0.219 |
| Mean | Stdev |
19_N1-54_H3-19 | 1.973 | 0.130 |
| Mean | Stdev |
2_H1-71_N3-2 | 1.949 | 0.088 |
| Mean | Stdev |
2_H21-71_O2-2 | 1.895 | 0.120 |
| Mean | Stdev |
2_O6-71_H41-2 | 1.949 | 0.147 |
| Mean | Stdev |
20_H41-53_O6-20 | 2.004 | 0.180 |
| Mean | Stdev |
20_N3-53_H1-20 | 1.955 | 0.096 |
| Mean | Stdev |
20_O2-53_H21-20 | 1.907 | 0.130 |
| Mean | Stdev |
21_H3-52_N1-21 | 1.962 | 0.125 |
| Mean | Stdev |
21_O4-52_H61-21 | 2.004 | 0.196 |
| Mean | Stdev |
22_H41-51_O6-22 | 1.983 | 0.173 |
| Mean | Stdev |
22_N3-51_H1-22 | 1.952 | 0.094 |
| Mean | Stdev |
22_O2-51_H21-22 | 1.879 | 0.118 |
| Mean | Stdev |
23_H1-50_N3-23 | 1.959 | 0.097 |
| Mean | Stdev |
23_H21-50_O2-23 | 1.899 | 0.128 |
| Mean | Stdev |
23_O6-50_H41-23 | 1.979 | 0.169 |
| Mean | Stdev |
24_H3-49_N1-24 | 1.967 | 0.122 |
| Mean | Stdev |
24_O4-49_H61-24 | 1.990 | 0.178 |
| Mean | Stdev |
25_H3-48_N1-25 | 1.992 | 0.309 |
| Mean | Stdev |
25_O4-48_H61-25 | 2.034 | 0.371 |
| Mean | Stdev |
26_H61-47_O4-26 | 2.034 | 0.229 |
| Mean | Stdev |
26_N1-47_H3-26 | 1.968 | 0.118 |
| Mean | Stdev |
27_H1-46_N3-27 | 1.945 | 0.088 |
| Mean | Stdev |
27_H21-46_O2-27 | 1.889 | 0.119 |
| Mean | Stdev |
27_O6-46_H41-27 | 1.981 | 0.169 |
| Mean | Stdev |
28_H1-45_N3-28 | 1.950 | 0.088 |
| Mean | Stdev |
28_H21-45_O2-28 | 1.895 | 0.124 |
| Mean | Stdev |
28_O6-45_H41-28 | 1.962 | 0.159 |
| Mean | Stdev |
29_H41-44_O6-29 | 1.985 | 0.164 |
| Mean | Stdev |
29_N3-44_H1-29 | 1.958 | 0.093 |
| Mean | Stdev |
29_O2-44_H21-29 | 1.884 | 0.117 |
| Mean | Stdev |
3_H41-70_O6-3 | 1.957 | 0.157 |
| Mean | Stdev |
3_N3-70_H1-3 | 1.959 | 0.090 |
| Mean | Stdev |
3_O2-70_H21-3 | 1.899 | 0.124 |
| Mean | Stdev |
30_H61-43_O4-30 | 2.001 | 0.193 |
| Mean | Stdev |
30_N1-43_H3-30 | 1.962 | 0.118 |
| Mean | Stdev |
31_H61-42_O4-31 | 1.994 | 0.176 |
| Mean | Stdev |
31_N1-42_H3-31 | 1.987 | 0.129 |
| Mean | Stdev |
32_H3-41_N1-32 | 1.991 | 0.125 |
| Mean | Stdev |
32_O4-41_H61-32 | 1.994 | 0.190 |
| Mean | Stdev |
33_H41-40_O6-33 | 1.986 | 0.173 |
| Mean | Stdev |
33_N3-40_H1-33 | 1.949 | 0.091 |
| Mean | Stdev |
33_O2-40_H21-33 | 1.886 | 0.121 |
| Mean | Stdev |
34_H1-39_N3-34 | 1.961 | 0.092 |
| Mean | Stdev |
34_H21-39_O2-34 | 1.902 | 0.125 |
| Mean | Stdev |
34_O6-39_H41-34 | 1.961 | 0.162 |
| Mean | Stdev |
35_H41-38_O6-35 | 1.952 | 0.151 |
| Mean | Stdev |
35_N3-38_H1-35 | 1.948 | 0.088 |
| Mean | Stdev |
35_O2-38_H21-35 | 1.897 | 0.129 |
| Mean | Stdev |
36_H1-37_N3-36 | 2.981 | 2.373 |
| Mean | Stdev |
36_H21-37_O2-36 | 2.939 | 2.386 |
| Mean | Stdev |
36_O6-37_H41-36 | 3.093 | 2.468 |
| Mean | Stdev |
4_H1-69_N3-4 | 1.947 | 0.088 |
| Mean | Stdev |
4_H21-69_O2-4 | 1.889 | 0.123 |
| Mean | Stdev |
4_O6-69_H41-4 | 1.983 | 0.168 |
| Mean | Stdev |
5_H61-68_O4-5 | 1.989 | 0.184 |
| Mean | Stdev |
5_N1-68_H3-5 | 1.992 | 0.125 |
| Mean | Stdev |
6_H3-67_N1-6 | 1.989 | 0.121 |
| Mean | Stdev |
6_O4-67_H61-6 | 1.992 | 0.177 |
| Mean | Stdev |
7_H3-66_N1-7 | 1.965 | 0.115 |
| Mean | Stdev |
7_O4-66_H61-7 | 2.008 | 0.201 |
| Mean | Stdev |
8_H1-65_N3-8 | 1.961 | 0.096 |
| Mean | Stdev |
8_H21-65_O2-8 | 1.886 | 0.121 |
| Mean | Stdev |
8_O6-65_H41-8 | 1.988 | 0.172 |
| Mean | Stdev |
9_H41-64_O6-9 | 1.968 | 0.162 |
| Mean | Stdev |
9_N3-64_H1-9 | 1.951 | 0.092 |
| Mean | Stdev |
9_O2-64_H21-9 | 1.898 | 0.122 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-72 | 2.2762 | 1.1969 |
1 | N3-H1_1-72 | 2.1686 | 0.9621 |
1 | O2-H21_1-72 | 2.1210 | 0.8758 |
2 | O6-H41_2-71 | 1.9492 | 0.1471 |
2 | H1-N3_2-71 | 1.9490 | 0.0877 |
2 | H21-O2_2-71 | 1.8955 | 0.1201 |
3 | H41-O6_3-70 | 1.9574 | 0.1571 |
3 | N3-H1_3-70 | 1.9589 | 0.0903 |
3 | O2-H21_3-70 | 1.8995 | 0.1238 |
4 | O6-H41_4-69 | 1.9827 | 0.1682 |
4 | H1-N3_4-69 | 1.9471 | 0.0879 |
4 | H21-O2_4-69 | 1.8885 | 0.1226 |
5 | N1-H3_5-68 | 1.9915 | 0.1251 |
5 | H61-O4_5-68 | 1.9890 | 0.1842 |
6 | H3-N1_6-67 | 1.9886 | 0.1215 |
6 | O4-H61_6-67 | 1.9917 | 0.1775 |
7 | H3-N1_7-66 | 1.9653 | 0.1147 |
7 | O4-H61_7-66 | 2.0081 | 0.2008 |
8 | O6-H41_8-65 | 1.9876 | 0.1721 |
8 | H1-N3_8-65 | 1.9609 | 0.0957 |
8 | H21-O2_8-65 | 1.8860 | 0.1208 |
9 | H41-O6_9-64 | 1.9676 | 0.1620 |
9 | N3-H1_9-64 | 1.9510 | 0.0923 |
9 | O2-H21_9-64 | 1.8980 | 0.1217 |
10 | H41-O6_10-63 | 1.9909 | 0.1716 |
10 | N3-H1_10-63 | 1.9464 | 0.0883 |
10 | O2-H21_10-63 | 1.8852 | 0.1180 |
11 | H3-N1_11-62 | 1.9694 | 0.1279 |
11 | O4-H61_11-62 | 2.0203 | 0.2362 |
12 | N1-H3_12-61 | 1.9685 | 0.1222 |
12 | H61-O4_12-61 | 2.0167 | 0.2054 |
13 | N1-H3_13-60 | 1.9686 | 0.1162 |
13 | H61-O4_13-60 | 1.9883 | 0.1765 |
14 | H41-O6_14-59 | 1.9828 | 0.2175 |
14 | N3-H1_14-59 | 1.9602 | 0.1150 |
14 | O2-H21_14-59 | 1.8964 | 0.1271 |
15 | O6-H41_15-58 | 1.9805 | 0.1681 |
15 | H1-N3_15-58 | 1.9504 | 0.0888 |
15 | H21-O2_15-58 | 1.8751 | 0.1172 |
16 | N1-H3_16-57 | 1.9578 | 0.1178 |
16 | H61-O4_16-57 | 2.0044 | 0.1974 |
17 | O6-H41_17-56 | 2.0045 | 0.1820 |
17 | H1-N3_17-56 | 1.9528 | 0.0998 |
17 | H21-O2_17-56 | 1.9081 | 0.1312 |
18 | H3-N1_18-55 | 1.9766 | 0.1650 |
18 | O4-H61_18-55 | 2.0357 | 0.3339 |
19 | N1-H3_19-54 | 1.9727 | 0.1297 |
19 | H61-O4_19-54 | 2.0096 | 0.2186 |
20 | H41-O6_20-53 | 2.0036 | 0.1804 |
20 | N3-H1_20-53 | 1.9547 | 0.0958 |
20 | O2-H21_20-53 | 1.9067 | 0.1296 |
21 | H3-N1_21-52 | 1.9624 | 0.1247 |
21 | O4-H61_21-52 | 2.0038 | 0.1964 |
22 | H41-O6_22-51 | 1.9833 | 0.1731 |
22 | N3-H1_22-51 | 1.9516 | 0.0939 |
22 | O2-H21_22-51 | 1.8787 | 0.1178 |
23 | O6-H41_23-50 | 1.9792 | 0.1692 |
23 | H1-N3_23-50 | 1.9586 | 0.0973 |
23 | H21-O2_23-50 | 1.8992 | 0.1278 |
24 | H3-N1_24-49 | 1.9671 | 0.1219 |
24 | O4-H61_24-49 | 1.9905 | 0.1776 |
25 | H3-N1_25-48 | 1.9924 | 0.3093 |
25 | O4-H61_25-48 | 2.0335 | 0.3711 |
26 | N1-H3_26-47 | 1.9680 | 0.1178 |
26 | H61-O4_26-47 | 2.0337 | 0.2286 |
27 | O6-H41_27-46 | 1.9806 | 0.1694 |
27 | H1-N3_27-46 | 1.9452 | 0.0881 |
27 | H21-O2_27-46 | 1.8886 | 0.1188 |
28 | O6-H41_28-45 | 1.9615 | 0.1594 |
28 | H1-N3_28-45 | 1.9498 | 0.0883 |
28 | H21-O2_28-45 | 1.8948 | 0.1242 |
29 | H41-O6_29-44 | 1.9847 | 0.1636 |
29 | N3-H1_29-44 | 1.9583 | 0.0929 |
29 | O2-H21_29-44 | 1.8841 | 0.1172 |
30 | N1-H3_30-43 | 1.9615 | 0.1176 |
30 | H61-O4_30-43 | 2.0011 | 0.1926 |
31 | N1-H3_31-42 | 1.9868 | 0.1294 |
31 | H61-O4_31-42 | 1.9940 | 0.1756 |
32 | H3-N1_32-41 | 1.9911 | 0.1249 |
32 | O4-H61_32-41 | 1.9943 | 0.1904 |
33 | H41-O6_33-40 | 1.9862 | 0.1732 |
33 | N3-H1_33-40 | 1.9487 | 0.0913 |
33 | O2-H21_33-40 | 1.8861 | 0.1209 |
34 | O6-H41_34-39 | 1.9610 | 0.1616 |
34 | H1-N3_34-39 | 1.9606 | 0.0924 |
34 | H21-O2_34-39 | 1.9020 | 0.1248 |
35 | H41-O6_35-38 | 1.9516 | 0.1514 |
35 | N3-H1_35-38 | 1.9479 | 0.0884 |
35 | O2-H21_35-38 | 1.8970 | 0.1286 |
36 | O6-H41_36-37 | 3.0929 | 2.4679 |
36 | H1-N3_36-37 | 2.9812 | 2.3732 |
36 | H21-O2_36-37 | 2.9390 | 2.3865 |