Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
5' |
C |
- |
G |
- |
C |
- |
G |
- |
A |
- |
X |
- |
G |
- |
T |
- |
C |
- |
G |
- |
C |
- |
G |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
G |
- |
X |
- |
A |
- |
G |
- |
C |
- |
G |
- |
C |
5' |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
18 |
|
17 |
|
16 |
|
15 |
|
14 |
|
13 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-24_O6-1 | 3.259 | 2.505 |
| Mean | Stdev |
1_N3-24_H1-1 | 3.148 | 2.381 |
| Mean | Stdev |
1_O2-24_H21-1 | 3.099 | 2.422 |
| Mean | Stdev |
10_H1-15_N3-10 | 1.973 | 0.092 |
| Mean | Stdev |
10_H21-15_O2-10 | 1.905 | 0.127 |
| Mean | Stdev |
10_O6-15_H41-10 | 1.946 | 0.146 |
| Mean | Stdev |
11_H41-14_O6-11 | 1.955 | 0.174 |
| Mean | Stdev |
11_N3-14_H1-11 | 1.972 | 0.102 |
| Mean | Stdev |
11_O2-14_H21-11 | 1.893 | 0.131 |
| Mean | Stdev |
12_H1-13_N3-12 | 4.847 | 3.368 |
| Mean | Stdev |
12_H21-13_O2-12 | 5.026 | 3.726 |
| Mean | Stdev |
12_O6-13_H41-12 | 4.743 | 3.261 |
| Mean | Stdev |
2_H1-23_N3-2 | 1.966 | 0.092 |
| Mean | Stdev |
2_H21-23_O2-2 | 1.888 | 0.123 |
| Mean | Stdev |
2_O6-23_H41-2 | 1.947 | 0.151 |
| Mean | Stdev |
3_H41-22_O6-3 | 1.970 | 0.306 |
| Mean | Stdev |
3_N3-22_H1-3 | 1.982 | 0.152 |
| Mean | Stdev |
3_O2-22_H21-3 | 1.904 | 0.127 |
| Mean | Stdev |
4_H1-21_N3-4 | 1.962 | 0.097 |
| Mean | Stdev |
4_H21-21_O2-4 | 1.874 | 0.114 |
| Mean | Stdev |
4_O6-21_H41-4 | 1.960 | 0.167 |
| Mean | Stdev |
5_H61-20_O4-5 | 1.965 | 0.175 |
| Mean | Stdev |
5_N1-20_H3-5 | 2.005 | 0.136 |
| Mean | Stdev |
8_H3-17_N1-8 | 2.004 | 0.138 |
| Mean | Stdev |
8_O4-17_H61-8 | 1.970 | 0.173 |
| Mean | Stdev |
9_H41-16_O6-9 | 1.960 | 0.154 |
| Mean | Stdev |
9_N3-16_H1-9 | 1.960 | 0.090 |
| Mean | Stdev |
9_O2-16_H21-9 | 1.875 | 0.115 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-24 | 3.2588 | 2.5050 |
1 | N3-H1_1-24 | 3.1476 | 2.3805 |
1 | O2-H21_1-24 | 3.0988 | 2.4221 |
2 | O6-H41_2-23 | 1.9473 | 0.1513 |
2 | H1-N3_2-23 | 1.9659 | 0.0923 |
2 | H21-O2_2-23 | 1.8882 | 0.1226 |
3 | H41-O6_3-22 | 1.9699 | 0.3058 |
3 | N3-H1_3-22 | 1.9825 | 0.1524 |
3 | O2-H21_3-22 | 1.9036 | 0.1266 |
4 | O6-H41_4-21 | 1.9600 | 0.1667 |
4 | H1-N3_4-21 | 1.9619 | 0.0969 |
4 | H21-O2_4-21 | 1.8743 | 0.1141 |
5 | N1-H3_5-20 | 2.0054 | 0.1357 |
5 | H61-O4_5-20 | 1.9646 | 0.1748 |
8 | H3-N1_8-17 | 2.0042 | 0.1375 |
8 | O4-H61_8-17 | 1.9698 | 0.1733 |
9 | H41-O6_9-16 | 1.9600 | 0.1540 |
9 | N3-H1_9-16 | 1.9601 | 0.0904 |
9 | O2-H21_9-16 | 1.8755 | 0.1152 |
10 | O6-H41_10-15 | 1.9456 | 0.1460 |
10 | H1-N3_10-15 | 1.9731 | 0.0925 |
10 | H21-O2_10-15 | 1.9047 | 0.1273 |
11 | H41-O6_11-14 | 1.9553 | 0.1738 |
11 | N3-H1_11-14 | 1.9722 | 0.1024 |
11 | O2-H21_11-14 | 1.8929 | 0.1312 |
12 | O6-H41_12-13 | 4.7429 | 3.2608 |
12 | H1-N3_12-13 | 4.8466 | 3.3675 |
12 | H21-O2_12-13 | 5.0262 | 3.7262 |