Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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T |
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G |
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C |
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G |
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T |
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G |
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C |
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G |
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T |
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G |
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C |
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G |
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T |
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G |
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G |
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C |
3' |
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x |
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3' |
C |
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G |
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A |
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C |
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G |
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C |
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A |
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C |
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G |
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C |
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A |
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G |
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C |
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A |
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C |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.268 | 1.314 |
| Mean | Stdev |
1_H21-36_O2-1 | 2.191 | 1.494 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.464 | 1.784 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.975 | 0.094 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.882 | 0.120 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.975 | 0.157 |
| Mean | Stdev |
11_H3-26_N1-11 | 1.982 | 0.124 |
| Mean | Stdev |
11_O4-26_H61-11 | 1.984 | 0.197 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.969 | 0.094 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.894 | 0.121 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.960 | 0.154 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.946 | 0.144 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.962 | 0.089 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.899 | 0.125 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.978 | 0.097 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.879 | 0.115 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.975 | 0.162 |
| Mean | Stdev |
15_H3-22_N1-15 | 1.996 | 0.129 |
| Mean | Stdev |
15_O4-22_H61-15 | 1.953 | 0.169 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.963 | 0.104 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.863 | 0.113 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.980 | 0.208 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.965 | 0.092 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.905 | 0.129 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.960 | 0.151 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.010 | 0.381 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.002 | 0.132 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.928 | 0.159 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.978 | 0.170 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.967 | 0.094 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.905 | 0.130 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.960 | 0.113 |
| Mean | Stdev |
3_O4-34_H61-3 | 2.016 | 0.202 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.970 | 0.093 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.894 | 0.122 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.962 | 0.157 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.943 | 0.142 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.967 | 0.089 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.904 | 0.129 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.975 | 0.096 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.883 | 0.120 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.975 | 0.158 |
| Mean | Stdev |
7_H3-30_N1-7 | 1.985 | 0.123 |
| Mean | Stdev |
7_O4-30_H61-7 | 1.976 | 0.184 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.971 | 0.097 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.898 | 0.123 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.962 | 0.169 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.949 | 0.145 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.965 | 0.090 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.898 | 0.127 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.4636 | 1.7841 |
1 | H1-N3_1-36 | 2.2680 | 1.3137 |
1 | H21-O2_1-36 | 2.1907 | 1.4940 |
2 | H41-O6_2-35 | 1.9782 | 0.1701 |
2 | N3-H1_2-35 | 1.9669 | 0.0944 |
2 | O2-H21_2-35 | 1.9046 | 0.1297 |
3 | H3-N1_3-34 | 1.9601 | 0.1131 |
3 | O4-H61_3-34 | 2.0156 | 0.2017 |
4 | O6-H41_4-33 | 1.9617 | 0.1569 |
4 | H1-N3_4-33 | 1.9696 | 0.0930 |
4 | H21-O2_4-33 | 1.8936 | 0.1220 |
5 | H41-O6_5-32 | 1.9426 | 0.1421 |
5 | N3-H1_5-32 | 1.9674 | 0.0893 |
5 | O2-H21_5-32 | 1.9036 | 0.1286 |
6 | O6-H41_6-31 | 1.9753 | 0.1583 |
6 | H1-N3_6-31 | 1.9748 | 0.0963 |
6 | H21-O2_6-31 | 1.8826 | 0.1201 |
7 | H3-N1_7-30 | 1.9848 | 0.1234 |
7 | O4-H61_7-30 | 1.9764 | 0.1842 |
8 | O6-H41_8-29 | 1.9619 | 0.1692 |
8 | H1-N3_8-29 | 1.9710 | 0.0967 |
8 | H21-O2_8-29 | 1.8977 | 0.1228 |
9 | H41-O6_9-28 | 1.9486 | 0.1454 |
9 | N3-H1_9-28 | 1.9653 | 0.0900 |
9 | O2-H21_9-28 | 1.8978 | 0.1273 |
10 | O6-H41_10-27 | 1.9749 | 0.1573 |
10 | H1-N3_10-27 | 1.9754 | 0.0941 |
10 | H21-O2_10-27 | 1.8821 | 0.1200 |
11 | H3-N1_11-26 | 1.9819 | 0.1245 |
11 | O4-H61_11-26 | 1.9835 | 0.1965 |
12 | O6-H41_12-25 | 1.9599 | 0.1543 |
12 | H1-N3_12-25 | 1.9692 | 0.0943 |
12 | H21-O2_12-25 | 1.8940 | 0.1208 |
13 | H41-O6_13-24 | 1.9456 | 0.1445 |
13 | N3-H1_13-24 | 1.9618 | 0.0889 |
13 | O2-H21_13-24 | 1.8989 | 0.1249 |
14 | O6-H41_14-23 | 1.9747 | 0.1623 |
14 | H1-N3_14-23 | 1.9777 | 0.0969 |
14 | H21-O2_14-23 | 1.8791 | 0.1149 |
15 | H3-N1_15-22 | 1.9959 | 0.1289 |
15 | O4-H61_15-22 | 1.9534 | 0.1689 |
16 | O6-H41_16-21 | 1.9800 | 0.2077 |
16 | H1-N3_16-21 | 1.9633 | 0.1041 |
16 | H21-O2_16-21 | 1.8625 | 0.1134 |
17 | O6-H41_17-20 | 1.9598 | 0.1513 |
17 | H1-N3_17-20 | 1.9654 | 0.0921 |
17 | H21-O2_17-20 | 1.9053 | 0.1285 |
18 | H41-O6_18-19 | 2.0095 | 0.3806 |
18 | N3-H1_18-19 | 2.0019 | 0.1323 |
18 | O2-H21_18-19 | 1.9278 | 0.1585 |