Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
13 |
|
14 |
|
15 |
|
16 |
|
5' |
C |
- |
G |
- |
T |
- |
C |
- |
G |
- |
G |
- |
C |
- |
T |
- |
A |
- |
G |
- |
C |
- |
C |
- |
G |
- |
A |
- |
G |
- |
C |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
G |
- |
C |
- |
A |
- |
G |
- |
C |
- |
C |
- |
G |
- |
A |
- |
T |
- |
C |
- |
G |
- |
G |
- |
C |
- |
T |
- |
C |
- |
G |
5' |
|
32 |
|
31 |
|
30 |
|
29 |
|
28 |
|
27 |
|
26 |
|
25 |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
18 |
|
17 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 4.368 | 3.706 |
| Mean | Stdev |
1_N3-32_H1-1 | 4.249 | 3.400 |
| Mean | Stdev |
1_O2-32_H21-1 | 4.539 | 3.789 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.973 | 0.094 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.910 | 0.129 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.984 | 0.165 |
| Mean | Stdev |
11_H41-22_O6-11 | 1.956 | 0.151 |
| Mean | Stdev |
11_N3-22_H1-11 | 1.964 | 0.091 |
| Mean | Stdev |
11_O2-22_H21-11 | 1.916 | 0.133 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.966 | 0.169 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.962 | 0.094 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.884 | 0.122 |
| Mean | Stdev |
13_H1-20_N3-13 | 1.971 | 0.094 |
| Mean | Stdev |
13_H21-20_O2-13 | 1.889 | 0.121 |
| Mean | Stdev |
13_O6-20_H41-13 | 1.965 | 0.160 |
| Mean | Stdev |
14_H61-19_O4-14 | 1.967 | 0.171 |
| Mean | Stdev |
14_N1-19_H3-14 | 1.985 | 0.122 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.966 | 0.094 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.907 | 0.129 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.967 | 0.159 |
| Mean | Stdev |
16_H41-17_O6-16 | 2.002 | 0.261 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.004 | 0.150 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.922 | 0.163 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.980 | 0.111 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.889 | 0.130 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.976 | 0.181 |
| Mean | Stdev |
3_H3-30_N1-3 | 2.030 | 0.143 |
| Mean | Stdev |
3_O4-30_H61-3 | 1.953 | 0.164 |
| Mean | Stdev |
4_H41-29_O6-4 | 1.962 | 0.157 |
| Mean | Stdev |
4_N3-29_H1-4 | 1.968 | 0.093 |
| Mean | Stdev |
4_O2-29_H21-4 | 1.889 | 0.120 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.966 | 0.092 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.882 | 0.117 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.974 | 0.170 |
| Mean | Stdev |
6_H1-27_N3-6 | 1.963 | 0.091 |
| Mean | Stdev |
6_H21-27_O2-6 | 1.914 | 0.133 |
| Mean | Stdev |
6_O6-27_H41-6 | 1.958 | 0.157 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.983 | 0.164 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.972 | 0.092 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.911 | 0.130 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.965 | 0.127 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.037 | 0.241 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.035 | 0.226 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.968 | 0.121 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 4.3682 | 3.7064 |
1 | N3-H1_1-32 | 4.2487 | 3.4002 |
1 | O2-H21_1-32 | 4.5394 | 3.7889 |
2 | O6-H41_2-31 | 1.9764 | 0.1807 |
2 | H1-N3_2-31 | 1.9805 | 0.1110 |
2 | H21-O2_2-31 | 1.8885 | 0.1302 |
3 | H3-N1_3-30 | 2.0304 | 0.1433 |
3 | O4-H61_3-30 | 1.9531 | 0.1638 |
4 | H41-O6_4-29 | 1.9624 | 0.1567 |
4 | N3-H1_4-29 | 1.9677 | 0.0926 |
4 | O2-H21_4-29 | 1.8887 | 0.1198 |
5 | O6-H41_5-28 | 1.9738 | 0.1701 |
5 | H1-N3_5-28 | 1.9662 | 0.0925 |
5 | H21-O2_5-28 | 1.8822 | 0.1175 |
6 | O6-H41_6-27 | 1.9583 | 0.1569 |
6 | H1-N3_6-27 | 1.9631 | 0.0911 |
6 | H21-O2_6-27 | 1.9142 | 0.1327 |
7 | H41-O6_7-26 | 1.9832 | 0.1642 |
7 | N3-H1_7-26 | 1.9717 | 0.0919 |
7 | O2-H21_7-26 | 1.9105 | 0.1302 |
8 | H3-N1_8-25 | 1.9652 | 0.1273 |
8 | O4-H61_8-25 | 2.0365 | 0.2409 |
9 | N1-H3_9-24 | 1.9676 | 0.1214 |
9 | H61-O4_9-24 | 2.0350 | 0.2258 |
10 | O6-H41_10-23 | 1.9843 | 0.1652 |
10 | H1-N3_10-23 | 1.9731 | 0.0944 |
10 | H21-O2_10-23 | 1.9100 | 0.1290 |
11 | H41-O6_11-22 | 1.9556 | 0.1513 |
11 | N3-H1_11-22 | 1.9645 | 0.0913 |
11 | O2-H21_11-22 | 1.9159 | 0.1332 |
12 | H41-O6_12-21 | 1.9656 | 0.1688 |
12 | N3-H1_12-21 | 1.9623 | 0.0937 |
12 | O2-H21_12-21 | 1.8839 | 0.1217 |
13 | O6-H41_13-20 | 1.9647 | 0.1597 |
13 | H1-N3_13-20 | 1.9710 | 0.0937 |
13 | H21-O2_13-20 | 1.8889 | 0.1207 |
14 | N1-H3_14-19 | 1.9847 | 0.1219 |
14 | H61-O4_14-19 | 1.9672 | 0.1707 |
15 | O6-H41_15-18 | 1.9667 | 0.1587 |
15 | H1-N3_15-18 | 1.9664 | 0.0940 |
15 | H21-O2_15-18 | 1.9074 | 0.1294 |
16 | H41-O6_16-17 | 2.0024 | 0.2614 |
16 | N3-H1_16-17 | 2.0044 | 0.1496 |
16 | O2-H21_16-17 | 1.9221 | 0.1629 |