Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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C |
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G |
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C |
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G |
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C |
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T |
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A |
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G |
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C |
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G |
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C |
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G |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
- |
C |
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G |
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C |
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G |
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C |
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G |
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A |
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T |
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C |
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G |
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C |
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G |
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C |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 4.139 | 4.253 |
| Mean | Stdev |
1_N3-32_H1-1 | 3.661 | 3.335 |
| Mean | Stdev |
1_O2-32_H21-1 | 3.301 | 2.711 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.972 | 0.094 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.913 | 0.132 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.979 | 0.164 |
| Mean | Stdev |
11_H41-22_O6-11 | 1.954 | 0.152 |
| Mean | Stdev |
11_N3-22_H1-11 | 1.956 | 0.087 |
| Mean | Stdev |
11_O2-22_H21-11 | 1.886 | 0.118 |
| Mean | Stdev |
12_H1-21_N3-12 | 1.966 | 0.088 |
| Mean | Stdev |
12_H21-21_O2-12 | 1.891 | 0.121 |
| Mean | Stdev |
12_O6-21_H41-12 | 1.944 | 0.146 |
| Mean | Stdev |
13_H41-20_O6-13 | 1.954 | 0.152 |
| Mean | Stdev |
13_N3-20_H1-13 | 1.976 | 0.093 |
| Mean | Stdev |
13_O2-20_H21-13 | 1.912 | 0.128 |
| Mean | Stdev |
14_H1-19_N3-14 | 1.956 | 0.088 |
| Mean | Stdev |
14_H21-19_O2-14 | 1.865 | 0.113 |
| Mean | Stdev |
14_O6-19_H41-14 | 1.962 | 0.159 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.969 | 0.091 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.909 | 0.130 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.965 | 0.157 |
| Mean | Stdev |
16_H41-17_O6-16 | 1.992 | 0.313 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.009 | 0.246 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.934 | 0.261 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.965 | 0.094 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.904 | 0.130 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.939 | 0.150 |
| Mean | Stdev |
3_H41-30_O6-3 | 1.948 | 0.146 |
| Mean | Stdev |
3_N3-30_H1-3 | 1.964 | 0.089 |
| Mean | Stdev |
3_O2-30_H21-3 | 1.893 | 0.118 |
| Mean | Stdev |
4_H1-29_N3-4 | 1.966 | 0.090 |
| Mean | Stdev |
4_H21-29_O2-4 | 1.903 | 0.124 |
| Mean | Stdev |
4_O6-29_H41-4 | 1.943 | 0.146 |
| Mean | Stdev |
5_H41-28_O6-5 | 1.945 | 0.149 |
| Mean | Stdev |
5_N3-28_H1-5 | 1.965 | 0.091 |
| Mean | Stdev |
5_O2-28_H21-5 | 1.894 | 0.123 |
| Mean | Stdev |
6_H1-27_N3-6 | 1.962 | 0.091 |
| Mean | Stdev |
6_H21-27_O2-6 | 1.893 | 0.120 |
| Mean | Stdev |
6_O6-27_H41-6 | 1.954 | 0.152 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.979 | 0.164 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.971 | 0.095 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.913 | 0.131 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.963 | 0.117 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.022 | 0.215 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.023 | 0.208 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.964 | 0.118 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 4.1394 | 4.2534 |
1 | N3-H1_1-32 | 3.6612 | 3.3349 |
1 | O2-H21_1-32 | 3.3009 | 2.7107 |
2 | O6-H41_2-31 | 1.9391 | 0.1504 |
2 | H1-N3_2-31 | 1.9654 | 0.0941 |
2 | H21-O2_2-31 | 1.9041 | 0.1298 |
3 | H41-O6_3-30 | 1.9482 | 0.1463 |
3 | N3-H1_3-30 | 1.9641 | 0.0892 |
3 | O2-H21_3-30 | 1.8930 | 0.1185 |
4 | O6-H41_4-29 | 1.9427 | 0.1456 |
4 | H1-N3_4-29 | 1.9660 | 0.0903 |
4 | H21-O2_4-29 | 1.9029 | 0.1244 |
5 | H41-O6_5-28 | 1.9453 | 0.1489 |
5 | N3-H1_5-28 | 1.9647 | 0.0907 |
5 | O2-H21_5-28 | 1.8939 | 0.1232 |
6 | O6-H41_6-27 | 1.9535 | 0.1516 |
6 | H1-N3_6-27 | 1.9620 | 0.0906 |
6 | H21-O2_6-27 | 1.8930 | 0.1203 |
7 | H41-O6_7-26 | 1.9789 | 0.1641 |
7 | N3-H1_7-26 | 1.9710 | 0.0947 |
7 | O2-H21_7-26 | 1.9130 | 0.1314 |
8 | H3-N1_8-25 | 1.9626 | 0.1167 |
8 | O4-H61_8-25 | 2.0218 | 0.2146 |
9 | N1-H3_9-24 | 1.9638 | 0.1185 |
9 | H61-O4_9-24 | 2.0233 | 0.2076 |
10 | O6-H41_10-23 | 1.9789 | 0.1641 |
10 | H1-N3_10-23 | 1.9721 | 0.0936 |
10 | H21-O2_10-23 | 1.9128 | 0.1316 |
11 | H41-O6_11-22 | 1.9536 | 0.1522 |
11 | N3-H1_11-22 | 1.9555 | 0.0874 |
11 | O2-H21_11-22 | 1.8859 | 0.1185 |
12 | O6-H41_12-21 | 1.9444 | 0.1462 |
12 | H1-N3_12-21 | 1.9657 | 0.0882 |
12 | H21-O2_12-21 | 1.8915 | 0.1209 |
13 | H41-O6_13-20 | 1.9535 | 0.1521 |
13 | N3-H1_13-20 | 1.9763 | 0.0933 |
13 | O2-H21_13-20 | 1.9116 | 0.1284 |
14 | O6-H41_14-19 | 1.9616 | 0.1589 |
14 | H1-N3_14-19 | 1.9561 | 0.0885 |
14 | H21-O2_14-19 | 1.8654 | 0.1129 |
15 | O6-H41_15-18 | 1.9652 | 0.1570 |
15 | H1-N3_15-18 | 1.9687 | 0.0914 |
15 | H21-O2_15-18 | 1.9089 | 0.1297 |
16 | H41-O6_16-17 | 1.9918 | 0.3131 |
16 | N3-H1_16-17 | 2.0090 | 0.2458 |
16 | O2-H21_16-17 | 1.9338 | 0.2607 |