Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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G |
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A |
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G |
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A |
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C |
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T |
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A |
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G |
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C |
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C |
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T |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
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C |
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C |
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T |
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C |
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T |
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G |
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A |
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T |
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C |
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G |
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G |
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A |
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G |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 3.302 | 2.694 |
| Mean | Stdev |
1_N3-32_H1-1 | 3.165 | 2.464 |
| Mean | Stdev |
1_O2-32_H21-1 | 3.088 | 2.494 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.972 | 0.094 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.908 | 0.128 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.989 | 0.173 |
| Mean | Stdev |
11_H41-22_O6-11 | 1.955 | 0.156 |
| Mean | Stdev |
11_N3-22_H1-11 | 1.959 | 0.089 |
| Mean | Stdev |
11_O2-22_H21-11 | 1.906 | 0.128 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.978 | 0.168 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.956 | 0.091 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.888 | 0.122 |
| Mean | Stdev |
13_H3-20_N1-13 | 1.993 | 0.127 |
| Mean | Stdev |
13_O4-20_H61-13 | 1.967 | 0.172 |
| Mean | Stdev |
14_H41-19_O6-14 | 1.955 | 0.153 |
| Mean | Stdev |
14_N3-19_H1-14 | 1.963 | 0.090 |
| Mean | Stdev |
14_O2-19_H21-14 | 1.874 | 0.114 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.968 | 0.091 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.898 | 0.127 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.946 | 0.143 |
| Mean | Stdev |
16_H41-17_O6-16 | 1.976 | 0.186 |
| Mean | Stdev |
16_N3-17_H1-16 | 1.998 | 0.110 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.925 | 0.144 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.966 | 0.109 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.899 | 0.130 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.956 | 0.204 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.976 | 0.094 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.913 | 0.133 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.958 | 0.154 |
| Mean | Stdev |
4_H61-29_O4-4 | 1.977 | 0.176 |
| Mean | Stdev |
4_N1-29_H3-4 | 1.981 | 0.126 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.962 | 0.094 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.916 | 0.131 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.975 | 0.164 |
| Mean | Stdev |
6_H61-27_O4-6 | 1.977 | 0.176 |
| Mean | Stdev |
6_N1-27_H3-6 | 1.981 | 0.124 |
| Mean | Stdev |
7_H41-26_O6-7 | 2.023 | 0.186 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.977 | 0.099 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.899 | 0.127 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.955 | 0.123 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.098 | 0.291 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.017 | 0.217 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.963 | 0.119 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 3.3023 | 2.6937 |
1 | N3-H1_1-32 | 3.1651 | 2.4636 |
1 | O2-H21_1-32 | 3.0882 | 2.4938 |
2 | O6-H41_2-31 | 1.9565 | 0.2041 |
2 | H1-N3_2-31 | 1.9661 | 0.1093 |
2 | H21-O2_2-31 | 1.8987 | 0.1300 |
3 | O6-H41_3-30 | 1.9582 | 0.1543 |
3 | H1-N3_3-30 | 1.9755 | 0.0941 |
3 | H21-O2_3-30 | 1.9128 | 0.1328 |
4 | N1-H3_4-29 | 1.9811 | 0.1259 |
4 | H61-O4_4-29 | 1.9773 | 0.1757 |
5 | O6-H41_5-28 | 1.9754 | 0.1641 |
5 | H1-N3_5-28 | 1.9618 | 0.0936 |
5 | H21-O2_5-28 | 1.9160 | 0.1310 |
6 | N1-H3_6-27 | 1.9810 | 0.1236 |
6 | H61-O4_6-27 | 1.9774 | 0.1762 |
7 | H41-O6_7-26 | 2.0229 | 0.1861 |
7 | N3-H1_7-26 | 1.9766 | 0.0990 |
7 | O2-H21_7-26 | 1.8986 | 0.1268 |
8 | H3-N1_8-25 | 1.9548 | 0.1226 |
8 | O4-H61_8-25 | 2.0979 | 0.2915 |
9 | N1-H3_9-24 | 1.9634 | 0.1195 |
9 | H61-O4_9-24 | 2.0168 | 0.2168 |
10 | O6-H41_10-23 | 1.9892 | 0.1731 |
10 | H1-N3_10-23 | 1.9718 | 0.0944 |
10 | H21-O2_10-23 | 1.9079 | 0.1280 |
11 | H41-O6_11-22 | 1.9554 | 0.1558 |
11 | N3-H1_11-22 | 1.9586 | 0.0890 |
11 | O2-H21_11-22 | 1.9061 | 0.1281 |
12 | H41-O6_12-21 | 1.9780 | 0.1678 |
12 | N3-H1_12-21 | 1.9559 | 0.0907 |
12 | O2-H21_12-21 | 1.8881 | 0.1220 |
13 | H3-N1_13-20 | 1.9930 | 0.1265 |
13 | O4-H61_13-20 | 1.9671 | 0.1722 |
14 | H41-O6_14-19 | 1.9552 | 0.1533 |
14 | N3-H1_14-19 | 1.9631 | 0.0897 |
14 | O2-H21_14-19 | 1.8744 | 0.1141 |
15 | O6-H41_15-18 | 1.9456 | 0.1434 |
15 | H1-N3_15-18 | 1.9684 | 0.0908 |
15 | H21-O2_15-18 | 1.8983 | 0.1270 |
16 | H41-O6_16-17 | 1.9765 | 0.1858 |
16 | N3-H1_16-17 | 1.9980 | 0.1098 |
16 | O2-H21_16-17 | 1.9248 | 0.1445 |