Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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G |
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A |
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G |
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C |
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C |
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T |
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A |
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G |
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C |
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C |
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T |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
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C |
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C |
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T |
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C |
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G |
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G |
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A |
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T |
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C |
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G |
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G |
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A |
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G |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 2.634 | 2.027 |
| Mean | Stdev |
1_N3-32_H1-1 | 2.551 | 1.837 |
| Mean | Stdev |
1_O2-32_H21-1 | 2.482 | 1.829 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.968 | 0.094 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.901 | 0.124 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.991 | 0.169 |
| Mean | Stdev |
11_H41-22_O6-11 | 1.958 | 0.158 |
| Mean | Stdev |
11_N3-22_H1-11 | 1.961 | 0.091 |
| Mean | Stdev |
11_O2-22_H21-11 | 1.904 | 0.126 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.978 | 0.170 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.954 | 0.090 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.885 | 0.120 |
| Mean | Stdev |
13_H3-20_N1-13 | 1.991 | 0.125 |
| Mean | Stdev |
13_O4-20_H61-13 | 1.968 | 0.173 |
| Mean | Stdev |
14_H41-19_O6-14 | 1.959 | 0.155 |
| Mean | Stdev |
14_N3-19_H1-14 | 1.964 | 0.092 |
| Mean | Stdev |
14_O2-19_H21-14 | 1.877 | 0.117 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.967 | 0.090 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.900 | 0.125 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.944 | 0.141 |
| Mean | Stdev |
16_H41-17_O6-16 | 1.988 | 0.333 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.012 | 0.285 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.940 | 0.313 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.966 | 0.114 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.893 | 0.128 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.958 | 0.221 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.976 | 0.096 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.917 | 0.139 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.961 | 0.156 |
| Mean | Stdev |
4_H61-29_O4-4 | 1.999 | 0.207 |
| Mean | Stdev |
4_N1-29_H3-4 | 1.975 | 0.147 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.967 | 0.092 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.900 | 0.124 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.982 | 0.165 |
| Mean | Stdev |
6_H41-27_O6-6 | 1.951 | 0.155 |
| Mean | Stdev |
6_N3-27_H1-6 | 1.958 | 0.093 |
| Mean | Stdev |
6_O2-27_H21-6 | 1.907 | 0.125 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.978 | 0.168 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.961 | 0.090 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.891 | 0.125 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.970 | 0.124 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.031 | 0.219 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.031 | 0.215 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.961 | 0.116 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 2.6337 | 2.0266 |
1 | N3-H1_1-32 | 2.5507 | 1.8375 |
1 | O2-H21_1-32 | 2.4822 | 1.8292 |
2 | O6-H41_2-31 | 1.9581 | 0.2207 |
2 | H1-N3_2-31 | 1.9660 | 0.1139 |
2 | H21-O2_2-31 | 1.8925 | 0.1282 |
3 | O6-H41_3-30 | 1.9608 | 0.1556 |
3 | H1-N3_3-30 | 1.9755 | 0.0962 |
3 | H21-O2_3-30 | 1.9167 | 0.1388 |
4 | N1-H3_4-29 | 1.9754 | 0.1475 |
4 | H61-O4_4-29 | 1.9994 | 0.2071 |
5 | O6-H41_5-28 | 1.9820 | 0.1653 |
5 | H1-N3_5-28 | 1.9666 | 0.0917 |
5 | H21-O2_5-28 | 1.9001 | 0.1244 |
6 | H41-O6_6-27 | 1.9506 | 0.1546 |
6 | N3-H1_6-27 | 1.9582 | 0.0932 |
6 | O2-H21_6-27 | 1.9069 | 0.1252 |
7 | H41-O6_7-26 | 1.9783 | 0.1675 |
7 | N3-H1_7-26 | 1.9613 | 0.0902 |
7 | O2-H21_7-26 | 1.8909 | 0.1246 |
8 | H3-N1_8-25 | 1.9696 | 0.1242 |
8 | O4-H61_8-25 | 2.0308 | 0.2188 |
9 | N1-H3_9-24 | 1.9608 | 0.1164 |
9 | H61-O4_9-24 | 2.0307 | 0.2147 |
10 | O6-H41_10-23 | 1.9911 | 0.1687 |
10 | H1-N3_10-23 | 1.9685 | 0.0941 |
10 | H21-O2_10-23 | 1.9006 | 0.1244 |
11 | H41-O6_11-22 | 1.9580 | 0.1583 |
11 | N3-H1_11-22 | 1.9612 | 0.0906 |
11 | O2-H21_11-22 | 1.9043 | 0.1261 |
12 | H41-O6_12-21 | 1.9782 | 0.1699 |
12 | N3-H1_12-21 | 1.9537 | 0.0902 |
12 | O2-H21_12-21 | 1.8855 | 0.1203 |
13 | H3-N1_13-20 | 1.9911 | 0.1254 |
13 | O4-H61_13-20 | 1.9683 | 0.1731 |
14 | H41-O6_14-19 | 1.9592 | 0.1549 |
14 | N3-H1_14-19 | 1.9642 | 0.0918 |
14 | O2-H21_14-19 | 1.8772 | 0.1171 |
15 | O6-H41_15-18 | 1.9443 | 0.1411 |
15 | H1-N3_15-18 | 1.9668 | 0.0901 |
15 | H21-O2_15-18 | 1.8997 | 0.1250 |
16 | H41-O6_16-17 | 1.9878 | 0.3332 |
16 | N3-H1_16-17 | 2.0121 | 0.2855 |
16 | O2-H21_16-17 | 1.9396 | 0.3132 |