Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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G |
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A |
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G |
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G |
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C |
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T |
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A |
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G |
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C |
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C |
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T |
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C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
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C |
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C |
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T |
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C |
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C |
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G |
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A |
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T |
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C |
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G |
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G |
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A |
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G |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 3.571 | 2.869 |
| Mean | Stdev |
1_N3-32_H1-1 | 3.486 | 2.758 |
| Mean | Stdev |
1_O2-32_H21-1 | 3.451 | 2.837 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.972 | 0.094 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.905 | 0.128 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.994 | 0.173 |
| Mean | Stdev |
11_H41-22_O6-11 | 1.961 | 0.159 |
| Mean | Stdev |
11_N3-22_H1-11 | 1.958 | 0.091 |
| Mean | Stdev |
11_O2-22_H21-11 | 1.901 | 0.123 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.984 | 0.180 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.958 | 0.093 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.886 | 0.119 |
| Mean | Stdev |
13_H3-20_N1-13 | 1.992 | 0.130 |
| Mean | Stdev |
13_O4-20_H61-13 | 1.964 | 0.169 |
| Mean | Stdev |
14_H41-19_O6-14 | 1.958 | 0.152 |
| Mean | Stdev |
14_N3-19_H1-14 | 1.966 | 0.092 |
| Mean | Stdev |
14_O2-19_H21-14 | 1.879 | 0.119 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.972 | 0.091 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.902 | 0.128 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.949 | 0.148 |
| Mean | Stdev |
16_H41-17_O6-16 | 2.028 | 0.681 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.051 | 0.661 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.983 | 0.779 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.969 | 0.111 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.894 | 0.131 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.963 | 0.208 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.972 | 0.097 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.917 | 0.135 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.957 | 0.159 |
| Mean | Stdev |
4_H61-29_O4-4 | 1.990 | 0.181 |
| Mean | Stdev |
4_N1-29_H3-4 | 1.978 | 0.121 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.957 | 0.092 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.886 | 0.121 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.983 | 0.179 |
| Mean | Stdev |
6_H1-27_N3-6 | 1.961 | 0.091 |
| Mean | Stdev |
6_H21-27_O2-6 | 1.907 | 0.126 |
| Mean | Stdev |
6_O6-27_H41-6 | 1.957 | 0.160 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.989 | 0.172 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.967 | 0.095 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.904 | 0.128 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.962 | 0.117 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.024 | 0.219 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.040 | 0.225 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.962 | 0.113 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 3.5708 | 2.8695 |
1 | N3-H1_1-32 | 3.4858 | 2.7584 |
1 | O2-H21_1-32 | 3.4514 | 2.8374 |
2 | O6-H41_2-31 | 1.9632 | 0.2084 |
2 | H1-N3_2-31 | 1.9688 | 0.1110 |
2 | H21-O2_2-31 | 1.8943 | 0.1307 |
3 | O6-H41_3-30 | 1.9566 | 0.1592 |
3 | H1-N3_3-30 | 1.9725 | 0.0966 |
3 | H21-O2_3-30 | 1.9173 | 0.1345 |
4 | N1-H3_4-29 | 1.9780 | 0.1209 |
4 | H61-O4_4-29 | 1.9901 | 0.1813 |
5 | O6-H41_5-28 | 1.9831 | 0.1792 |
5 | H1-N3_5-28 | 1.9568 | 0.0916 |
5 | H21-O2_5-28 | 1.8862 | 0.1213 |
6 | O6-H41_6-27 | 1.9566 | 0.1595 |
6 | H1-N3_6-27 | 1.9612 | 0.0913 |
6 | H21-O2_6-27 | 1.9070 | 0.1260 |
7 | H41-O6_7-26 | 1.9890 | 0.1722 |
7 | N3-H1_7-26 | 1.9668 | 0.0950 |
7 | O2-H21_7-26 | 1.9039 | 0.1277 |
8 | H3-N1_8-25 | 1.9625 | 0.1175 |
8 | O4-H61_8-25 | 2.0242 | 0.2191 |
9 | N1-H3_9-24 | 1.9625 | 0.1134 |
9 | H61-O4_9-24 | 2.0396 | 0.2252 |
10 | O6-H41_10-23 | 1.9938 | 0.1731 |
10 | H1-N3_10-23 | 1.9720 | 0.0939 |
10 | H21-O2_10-23 | 1.9046 | 0.1282 |
11 | H41-O6_11-22 | 1.9612 | 0.1587 |
11 | N3-H1_11-22 | 1.9585 | 0.0906 |
11 | O2-H21_11-22 | 1.9005 | 0.1234 |
12 | H41-O6_12-21 | 1.9841 | 0.1796 |
12 | N3-H1_12-21 | 1.9581 | 0.0935 |
12 | O2-H21_12-21 | 1.8862 | 0.1190 |
13 | H3-N1_13-20 | 1.9924 | 0.1297 |
13 | O4-H61_13-20 | 1.9636 | 0.1687 |
14 | H41-O6_14-19 | 1.9584 | 0.1522 |
14 | N3-H1_14-19 | 1.9661 | 0.0923 |
14 | O2-H21_14-19 | 1.8788 | 0.1187 |
15 | O6-H41_15-18 | 1.9493 | 0.1484 |
15 | H1-N3_15-18 | 1.9725 | 0.0913 |
15 | H21-O2_15-18 | 1.9024 | 0.1280 |
16 | H41-O6_16-17 | 2.0279 | 0.6814 |
16 | N3-H1_16-17 | 2.0509 | 0.6608 |
16 | O2-H21_16-17 | 1.9834 | 0.7789 |