Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
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G |
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G |
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C |
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G |
- |
C |
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C |
- |
T |
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A |
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G |
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G |
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C |
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G |
- |
C |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
- |
C |
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C |
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G |
- |
C |
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G |
- |
G |
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A |
- |
T |
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C |
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C |
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G |
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C |
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G |
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C |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 4.016 | 3.043 |
| Mean | Stdev |
1_N3-32_H1-1 | 4.017 | 3.099 |
| Mean | Stdev |
1_O2-32_H21-1 | 4.072 | 3.283 |
| Mean | Stdev |
10_H1-23_N3-10 | 1.961 | 0.093 |
| Mean | Stdev |
10_H21-23_O2-10 | 1.895 | 0.126 |
| Mean | Stdev |
10_O6-23_H41-10 | 1.986 | 0.167 |
| Mean | Stdev |
11_H1-22_N3-11 | 1.961 | 0.089 |
| Mean | Stdev |
11_H21-22_O2-11 | 1.905 | 0.128 |
| Mean | Stdev |
11_O6-22_H41-11 | 1.946 | 0.147 |
| Mean | Stdev |
12_H41-21_O6-12 | 1.957 | 0.157 |
| Mean | Stdev |
12_N3-21_H1-12 | 1.964 | 0.089 |
| Mean | Stdev |
12_O2-21_H21-12 | 1.885 | 0.118 |
| Mean | Stdev |
13_H1-20_N3-13 | 1.968 | 0.092 |
| Mean | Stdev |
13_H21-20_O2-13 | 1.902 | 0.126 |
| Mean | Stdev |
13_O6-20_H41-13 | 1.946 | 0.150 |
| Mean | Stdev |
14_H41-19_O6-14 | 1.948 | 0.150 |
| Mean | Stdev |
14_N3-19_H1-14 | 1.966 | 0.090 |
| Mean | Stdev |
14_O2-19_H21-14 | 1.899 | 0.123 |
| Mean | Stdev |
15_H1-18_N3-15 | 1.964 | 0.092 |
| Mean | Stdev |
15_H21-18_O2-15 | 1.887 | 0.121 |
| Mean | Stdev |
15_O6-18_H41-15 | 1.951 | 0.149 |
| Mean | Stdev |
16_H41-17_O6-16 | 1.988 | 0.273 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.005 | 0.130 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.929 | 0.172 |
| Mean | Stdev |
2_H1-31_N3-2 | 1.964 | 0.118 |
| Mean | Stdev |
2_H21-31_O2-2 | 1.879 | 0.122 |
| Mean | Stdev |
2_O6-31_H41-2 | 1.975 | 0.234 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.973 | 0.093 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.923 | 0.134 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.958 | 0.155 |
| Mean | Stdev |
4_H41-29_O6-4 | 1.952 | 0.158 |
| Mean | Stdev |
4_N3-29_H1-4 | 1.965 | 0.091 |
| Mean | Stdev |
4_O2-29_H21-4 | 1.891 | 0.119 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.963 | 0.090 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.888 | 0.119 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.959 | 0.154 |
| Mean | Stdev |
6_H41-27_O6-6 | 1.952 | 0.153 |
| Mean | Stdev |
6_N3-27_H1-6 | 1.964 | 0.090 |
| Mean | Stdev |
6_O2-27_H21-6 | 1.906 | 0.127 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.983 | 0.168 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.959 | 0.091 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.897 | 0.124 |
| Mean | Stdev |
8_H3-25_N1-8 | 1.972 | 0.127 |
| Mean | Stdev |
8_O4-25_H61-8 | 2.034 | 0.227 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.030 | 0.215 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.972 | 0.120 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 4.0155 | 3.0432 |
1 | N3-H1_1-32 | 4.0172 | 3.0994 |
1 | O2-H21_1-32 | 4.0720 | 3.2832 |
2 | O6-H41_2-31 | 1.9751 | 0.2342 |
2 | H1-N3_2-31 | 1.9643 | 0.1182 |
2 | H21-O2_2-31 | 1.8787 | 0.1222 |
3 | O6-H41_3-30 | 1.9585 | 0.1546 |
3 | H1-N3_3-30 | 1.9734 | 0.0929 |
3 | H21-O2_3-30 | 1.9231 | 0.1340 |
4 | H41-O6_4-29 | 1.9517 | 0.1576 |
4 | N3-H1_4-29 | 1.9652 | 0.0913 |
4 | O2-H21_4-29 | 1.8907 | 0.1195 |
5 | O6-H41_5-28 | 1.9589 | 0.1544 |
5 | H1-N3_5-28 | 1.9631 | 0.0899 |
5 | H21-O2_5-28 | 1.8876 | 0.1187 |
6 | H41-O6_6-27 | 1.9523 | 0.1528 |
6 | N3-H1_6-27 | 1.9638 | 0.0902 |
6 | O2-H21_6-27 | 1.9060 | 0.1274 |
7 | H41-O6_7-26 | 1.9828 | 0.1680 |
7 | N3-H1_7-26 | 1.9587 | 0.0907 |
7 | O2-H21_7-26 | 1.8975 | 0.1243 |
8 | H3-N1_8-25 | 1.9721 | 0.1272 |
8 | O4-H61_8-25 | 2.0338 | 0.2268 |
9 | N1-H3_9-24 | 1.9725 | 0.1200 |
9 | H61-O4_9-24 | 2.0305 | 0.2155 |
10 | O6-H41_10-23 | 1.9855 | 0.1674 |
10 | H1-N3_10-23 | 1.9608 | 0.0927 |
10 | H21-O2_10-23 | 1.8946 | 0.1262 |
11 | O6-H41_11-22 | 1.9458 | 0.1466 |
11 | H1-N3_11-22 | 1.9609 | 0.0887 |
11 | H21-O2_11-22 | 1.9053 | 0.1279 |
12 | H41-O6_12-21 | 1.9572 | 0.1568 |
12 | N3-H1_12-21 | 1.9638 | 0.0893 |
12 | O2-H21_12-21 | 1.8852 | 0.1177 |
13 | O6-H41_13-20 | 1.9464 | 0.1500 |
13 | H1-N3_13-20 | 1.9681 | 0.0922 |
13 | H21-O2_13-20 | 1.9016 | 0.1257 |
14 | H41-O6_14-19 | 1.9483 | 0.1500 |
14 | N3-H1_14-19 | 1.9665 | 0.0901 |
14 | O2-H21_14-19 | 1.8995 | 0.1230 |
15 | O6-H41_15-18 | 1.9507 | 0.1493 |
15 | H1-N3_15-18 | 1.9644 | 0.0918 |
15 | H21-O2_15-18 | 1.8875 | 0.1215 |
16 | H41-O6_16-17 | 1.9878 | 0.2727 |
16 | N3-H1_16-17 | 2.0047 | 0.1303 |
16 | O2-H21_16-17 | 1.9285 | 0.1725 |