Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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5' |
C |
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G |
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C |
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G |
- |
A |
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A |
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T |
- |
T |
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C |
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G |
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C |
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G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
- |
C |
- |
G |
- |
C |
- |
T |
- |
T |
- |
A |
- |
A |
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G |
- |
C |
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G |
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C |
5' |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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16 |
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15 |
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14 |
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13 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-24_O6-1 | 2.860 | 2.301 |
| Mean | Stdev |
1_N3-24_H1-1 | 2.746 | 2.082 |
| Mean | Stdev |
1_O2-24_H21-1 | 2.674 | 2.031 |
| Mean | Stdev |
10_H1-15_N3-10 | 1.976 | 0.098 |
| Mean | Stdev |
10_H21-15_O2-10 | 1.901 | 0.125 |
| Mean | Stdev |
10_O6-15_H41-10 | 1.948 | 0.168 |
| Mean | Stdev |
11_H41-14_O6-11 | 1.940 | 0.147 |
| Mean | Stdev |
11_N3-14_H1-11 | 1.966 | 0.093 |
| Mean | Stdev |
11_O2-14_H21-11 | 1.892 | 0.123 |
| Mean | Stdev |
12_H1-13_N3-12 | 2.459 | 1.638 |
| Mean | Stdev |
12_H21-13_O2-12 | 2.409 | 1.662 |
| Mean | Stdev |
12_O6-13_H41-12 | 2.539 | 1.735 |
| Mean | Stdev |
2_H1-23_N3-2 | 1.966 | 0.093 |
| Mean | Stdev |
2_H21-23_O2-2 | 1.895 | 0.128 |
| Mean | Stdev |
2_O6-23_H41-2 | 1.941 | 0.146 |
| Mean | Stdev |
3_H41-22_O6-3 | 1.950 | 0.149 |
| Mean | Stdev |
3_N3-22_H1-3 | 1.976 | 0.092 |
| Mean | Stdev |
3_O2-22_H21-3 | 1.900 | 0.124 |
| Mean | Stdev |
4_H1-21_N3-4 | 1.970 | 0.094 |
| Mean | Stdev |
4_H21-21_O2-4 | 1.887 | 0.122 |
| Mean | Stdev |
4_O6-21_H41-4 | 1.968 | 0.164 |
| Mean | Stdev |
5_H61-20_O4-5 | 1.986 | 0.184 |
| Mean | Stdev |
5_N1-20_H3-5 | 1.988 | 0.128 |
| Mean | Stdev |
6_H61-19_O4-6 | 2.004 | 0.181 |
| Mean | Stdev |
6_N1-19_H3-6 | 1.979 | 0.118 |
| Mean | Stdev |
7_H3-18_N1-7 | 1.976 | 0.118 |
| Mean | Stdev |
7_O4-18_H61-7 | 2.007 | 0.181 |
| Mean | Stdev |
8_H3-17_N1-8 | 1.987 | 0.127 |
| Mean | Stdev |
8_O4-17_H61-8 | 1.985 | 0.183 |
| Mean | Stdev |
9_H41-16_O6-9 | 1.966 | 0.157 |
| Mean | Stdev |
9_N3-16_H1-9 | 1.967 | 0.091 |
| Mean | Stdev |
9_O2-16_H21-9 | 1.884 | 0.122 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-24 | 2.8601 | 2.3007 |
1 | N3-H1_1-24 | 2.7461 | 2.0819 |
1 | O2-H21_1-24 | 2.6736 | 2.0310 |
2 | O6-H41_2-23 | 1.9406 | 0.1465 |
2 | H1-N3_2-23 | 1.9660 | 0.0929 |
2 | H21-O2_2-23 | 1.8951 | 0.1282 |
3 | H41-O6_3-22 | 1.9496 | 0.1490 |
3 | N3-H1_3-22 | 1.9755 | 0.0924 |
3 | O2-H21_3-22 | 1.9002 | 0.1245 |
4 | O6-H41_4-21 | 1.9684 | 0.1637 |
4 | H1-N3_4-21 | 1.9695 | 0.0943 |
4 | H21-O2_4-21 | 1.8865 | 0.1219 |
5 | N1-H3_5-20 | 1.9878 | 0.1283 |
5 | H61-O4_5-20 | 1.9861 | 0.1838 |
6 | N1-H3_6-19 | 1.9793 | 0.1183 |
6 | H61-O4_6-19 | 2.0044 | 0.1809 |
7 | H3-N1_7-18 | 1.9763 | 0.1180 |
7 | O4-H61_7-18 | 2.0075 | 0.1813 |
8 | H3-N1_8-17 | 1.9866 | 0.1265 |
8 | O4-H61_8-17 | 1.9853 | 0.1832 |
9 | H41-O6_9-16 | 1.9658 | 0.1566 |
9 | N3-H1_9-16 | 1.9672 | 0.0909 |
9 | O2-H21_9-16 | 1.8841 | 0.1221 |
10 | O6-H41_10-15 | 1.9482 | 0.1675 |
10 | H1-N3_10-15 | 1.9756 | 0.0975 |
10 | H21-O2_10-15 | 1.9005 | 0.1247 |
11 | H41-O6_11-14 | 1.9395 | 0.1468 |
11 | N3-H1_11-14 | 1.9661 | 0.0927 |
11 | O2-H21_11-14 | 1.8919 | 0.1231 |
12 | O6-H41_12-13 | 2.5388 | 1.7350 |
12 | H1-N3_12-13 | 2.4591 | 1.6380 |
12 | H21-O2_12-13 | 2.4087 | 1.6622 |