Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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A |
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G |
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G |
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G |
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A |
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G |
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G |
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G |
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A |
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G |
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G |
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G |
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A |
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G |
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C |
3' |
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3' |
C |
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G |
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C |
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T |
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C |
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C |
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C |
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T |
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C |
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C |
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C |
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T |
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C |
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C |
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C |
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T |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 3.367 | 2.724 |
| Mean | Stdev |
1_H21-36_O2-1 | 3.124 | 2.537 |
| Mean | Stdev |
1_O6-36_H41-1 | 4.395 | 3.882 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.968 | 0.095 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.892 | 0.127 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.957 | 0.168 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.974 | 0.095 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.909 | 0.132 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.962 | 0.157 |
| Mean | Stdev |
12_H61-25_O4-12 | 1.991 | 0.191 |
| Mean | Stdev |
12_N1-25_H3-12 | 1.979 | 0.127 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.963 | 0.093 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.883 | 0.119 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.964 | 0.160 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.972 | 0.094 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.890 | 0.121 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.964 | 0.158 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.973 | 0.095 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.908 | 0.132 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.970 | 0.162 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.005 | 0.199 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.968 | 0.120 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.963 | 0.091 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.889 | 0.121 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.964 | 0.153 |
| Mean | Stdev |
18_H41-19_O6-18 | 2.001 | 0.309 |
| Mean | Stdev |
18_N3-19_H1-18 | 2.002 | 0.185 |
| Mean | Stdev |
18_O2-19_H21-18 | 1.918 | 0.204 |
| Mean | Stdev |
2_H41-35_O6-2 | 2.980 | 2.694 |
| Mean | Stdev |
2_N3-35_H1-2 | 2.953 | 2.590 |
| Mean | Stdev |
2_O2-35_H21-2 | 2.897 | 2.660 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.975 | 0.103 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.887 | 0.129 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.975 | 0.180 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.973 | 0.183 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.981 | 0.126 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.968 | 0.107 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.893 | 0.125 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.976 | 0.204 |
| Mean | Stdev |
6_H1-31_N3-6 | 2.033 | 0.500 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.945 | 0.455 |
| Mean | Stdev |
6_O6-31_H41-6 | 2.041 | 0.635 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.979 | 0.120 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.902 | 0.133 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.966 | 0.209 |
| Mean | Stdev |
8_H61-29_O4-8 | 1.988 | 0.190 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.984 | 0.133 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.966 | 0.093 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.886 | 0.121 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.967 | 0.160 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 4.3951 | 3.8816 |
1 | H1-N3_1-36 | 3.3673 | 2.7236 |
1 | H21-O2_1-36 | 3.1240 | 2.5370 |
2 | H41-O6_2-35 | 2.9800 | 2.6940 |
2 | N3-H1_2-35 | 2.9534 | 2.5903 |
2 | O2-H21_2-35 | 2.8971 | 2.6603 |
3 | O6-H41_3-34 | 1.9750 | 0.1800 |
3 | H1-N3_3-34 | 1.9746 | 0.1031 |
3 | H21-O2_3-34 | 1.8871 | 0.1294 |
4 | N1-H3_4-33 | 1.9810 | 0.1256 |
4 | H61-O4_4-33 | 1.9733 | 0.1829 |
5 | O6-H41_5-32 | 1.9759 | 0.2044 |
5 | H1-N3_5-32 | 1.9676 | 0.1068 |
5 | H21-O2_5-32 | 1.8935 | 0.1247 |
6 | O6-H41_6-31 | 2.0411 | 0.6346 |
6 | H1-N3_6-31 | 2.0332 | 0.5004 |
6 | H21-O2_6-31 | 1.9453 | 0.4551 |
7 | O6-H41_7-30 | 1.9656 | 0.2086 |
7 | H1-N3_7-30 | 1.9789 | 0.1196 |
7 | H21-O2_7-30 | 1.9016 | 0.1326 |
8 | N1-H3_8-29 | 1.9838 | 0.1325 |
8 | H61-O4_8-29 | 1.9881 | 0.1895 |
9 | O6-H41_9-28 | 1.9671 | 0.1599 |
9 | H1-N3_9-28 | 1.9659 | 0.0934 |
9 | H21-O2_9-28 | 1.8857 | 0.1208 |
10 | O6-H41_10-27 | 1.9572 | 0.1682 |
10 | H1-N3_10-27 | 1.9677 | 0.0953 |
10 | H21-O2_10-27 | 1.8924 | 0.1266 |
11 | O6-H41_11-26 | 1.9619 | 0.1570 |
11 | H1-N3_11-26 | 1.9744 | 0.0954 |
11 | H21-O2_11-26 | 1.9087 | 0.1317 |
12 | N1-H3_12-25 | 1.9788 | 0.1266 |
12 | H61-O4_12-25 | 1.9907 | 0.1908 |
13 | O6-H41_13-24 | 1.9642 | 0.1595 |
13 | H1-N3_13-24 | 1.9626 | 0.0927 |
13 | H21-O2_13-24 | 1.8833 | 0.1187 |
14 | O6-H41_14-23 | 1.9641 | 0.1583 |
14 | H1-N3_14-23 | 1.9724 | 0.0941 |
14 | H21-O2_14-23 | 1.8898 | 0.1206 |
15 | O6-H41_15-22 | 1.9704 | 0.1617 |
15 | H1-N3_15-22 | 1.9734 | 0.0951 |
15 | H21-O2_15-22 | 1.9079 | 0.1315 |
16 | N1-H3_16-21 | 1.9676 | 0.1198 |
16 | H61-O4_16-21 | 2.0048 | 0.1994 |
17 | O6-H41_17-20 | 1.9641 | 0.1529 |
17 | H1-N3_17-20 | 1.9632 | 0.0913 |
17 | H21-O2_17-20 | 1.8887 | 0.1212 |
18 | H41-O6_18-19 | 2.0007 | 0.3095 |
18 | N3-H1_18-19 | 2.0023 | 0.1848 |
18 | O2-H21_18-19 | 1.9176 | 0.2040 |