Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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G |
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T |
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G |
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G |
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G |
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T |
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G |
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G |
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G |
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T |
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G |
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G |
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G |
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T |
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G |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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C |
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A |
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C |
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C |
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C |
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A |
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C |
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C |
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C |
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A |
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C |
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C |
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C |
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A |
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C |
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G |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 1.997 | 0.117 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.913 | 0.142 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.978 | 0.206 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.964 | 0.091 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.899 | 0.125 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.955 | 0.157 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.966 | 0.093 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.888 | 0.123 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.963 | 0.153 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.982 | 0.123 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.976 | 0.172 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.972 | 0.095 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.873 | 0.113 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.978 | 0.161 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.966 | 0.094 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.900 | 0.125 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.950 | 0.152 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.972 | 0.097 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.897 | 0.121 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.971 | 0.160 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.970 | 0.117 |
| Mean | Stdev |
16_O4-21_H61-16 | 1.995 | 0.184 |
| Mean | Stdev |
17_H1-20_N3-17 | 2.971 | 2.182 |
| Mean | Stdev |
17_H21-20_O2-17 | 2.609 | 1.729 |
| Mean | Stdev |
17_O6-20_H41-17 | 3.512 | 3.096 |
| Mean | Stdev |
18_H41-19_O6-18 | 3.662 | 2.996 |
| Mean | Stdev |
18_N3-19_H1-18 | 3.492 | 2.715 |
| Mean | Stdev |
18_O2-19_H21-18 | 3.532 | 2.757 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.951 | 0.152 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.962 | 0.093 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.882 | 0.121 |
| Mean | Stdev |
3_H1-34_N3-3 | 1.976 | 0.098 |
| Mean | Stdev |
3_H21-34_O2-3 | 1.891 | 0.130 |
| Mean | Stdev |
3_O6-34_H41-3 | 1.975 | 0.165 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.993 | 0.130 |
| Mean | Stdev |
4_O4-33_H61-4 | 1.972 | 0.180 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.970 | 0.094 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.873 | 0.114 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.978 | 0.167 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.965 | 0.091 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.900 | 0.125 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.958 | 0.151 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.969 | 0.093 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.889 | 0.121 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.969 | 0.155 |
| Mean | Stdev |
8_H3-29_N1-8 | 1.982 | 0.123 |
| Mean | Stdev |
8_O4-29_H61-8 | 1.979 | 0.178 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.970 | 0.096 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.870 | 0.116 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.978 | 0.172 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9781 | 0.2062 |
1 | H1-N3_1-36 | 1.9966 | 0.1173 |
1 | H21-O2_1-36 | 1.9126 | 0.1421 |
2 | H41-O6_2-35 | 1.9506 | 0.1522 |
2 | N3-H1_2-35 | 1.9624 | 0.0926 |
2 | O2-H21_2-35 | 1.8824 | 0.1208 |
3 | O6-H41_3-34 | 1.9749 | 0.1645 |
3 | H1-N3_3-34 | 1.9762 | 0.0982 |
3 | H21-O2_3-34 | 1.8911 | 0.1295 |
4 | H3-N1_4-33 | 1.9932 | 0.1304 |
4 | O4-H61_4-33 | 1.9725 | 0.1796 |
5 | O6-H41_5-32 | 1.9778 | 0.1667 |
5 | H1-N3_5-32 | 1.9704 | 0.0943 |
5 | H21-O2_5-32 | 1.8732 | 0.1142 |
6 | O6-H41_6-31 | 1.9575 | 0.1508 |
6 | H1-N3_6-31 | 1.9648 | 0.0911 |
6 | H21-O2_6-31 | 1.8997 | 0.1249 |
7 | O6-H41_7-30 | 1.9692 | 0.1555 |
7 | H1-N3_7-30 | 1.9690 | 0.0929 |
7 | H21-O2_7-30 | 1.8887 | 0.1214 |
8 | H3-N1_8-29 | 1.9823 | 0.1234 |
8 | O4-H61_8-29 | 1.9789 | 0.1780 |
9 | O6-H41_9-28 | 1.9784 | 0.1718 |
9 | H1-N3_9-28 | 1.9696 | 0.0956 |
9 | H21-O2_9-28 | 1.8703 | 0.1164 |
10 | O6-H41_10-27 | 1.9553 | 0.1568 |
10 | H1-N3_10-27 | 1.9640 | 0.0911 |
10 | H21-O2_10-27 | 1.8987 | 0.1247 |
11 | O6-H41_11-26 | 1.9627 | 0.1526 |
11 | H1-N3_11-26 | 1.9663 | 0.0927 |
11 | H21-O2_11-26 | 1.8882 | 0.1233 |
12 | H3-N1_12-25 | 1.9819 | 0.1235 |
12 | O4-H61_12-25 | 1.9757 | 0.1721 |
13 | O6-H41_13-24 | 1.9784 | 0.1605 |
13 | H1-N3_13-24 | 1.9720 | 0.0947 |
13 | H21-O2_13-24 | 1.8728 | 0.1130 |
14 | O6-H41_14-23 | 1.9495 | 0.1523 |
14 | H1-N3_14-23 | 1.9656 | 0.0944 |
14 | H21-O2_14-23 | 1.8997 | 0.1254 |
15 | O6-H41_15-22 | 1.9706 | 0.1601 |
15 | H1-N3_15-22 | 1.9722 | 0.0967 |
15 | H21-O2_15-22 | 1.8966 | 0.1207 |
16 | H3-N1_16-21 | 1.9699 | 0.1167 |
16 | O4-H61_16-21 | 1.9949 | 0.1840 |
17 | O6-H41_17-20 | 3.5118 | 3.0956 |
17 | H1-N3_17-20 | 2.9715 | 2.1824 |
17 | H21-O2_17-20 | 2.6091 | 1.7294 |
18 | H41-O6_18-19 | 3.6621 | 2.9963 |
18 | N3-H1_18-19 | 3.4920 | 2.7154 |
18 | O2-H21_18-19 | 3.5317 | 2.7572 |