Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
13 |
|
14 |
|
15 |
|
16 |
|
17 |
|
18 |
|
5' |
T |
- |
G |
- |
T |
- |
T |
- |
A |
- |
G |
- |
G |
- |
G |
- |
T |
- |
T |
- |
A |
- |
G |
- |
G |
- |
G |
- |
T |
- |
T |
- |
A |
- |
G |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
A |
- |
C |
- |
A |
- |
A |
- |
T |
- |
C |
- |
C |
- |
C |
- |
A |
- |
A |
- |
T |
- |
C |
- |
C |
- |
C |
- |
A |
- |
A |
- |
T |
- |
C |
5' |
|
36 |
|
35 |
|
34 |
|
33 |
|
32 |
|
31 |
|
30 |
|
29 |
|
28 |
|
27 |
|
26 |
|
25 |
|
24 |
|
23 |
|
22 |
|
21 |
|
20 |
|
19 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H3-36_N1-1 | 2.312 | 1.303 |
| Mean | Stdev |
1_O4-36_H61-1 | 2.386 | 1.328 |
| Mean | Stdev |
10_H3-27_N1-10 | 1.962 | 0.120 |
| Mean | Stdev |
10_O4-27_H61-10 | 2.068 | 0.231 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.046 | 0.221 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.957 | 0.119 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.957 | 0.091 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.878 | 0.114 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.994 | 0.169 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.958 | 0.092 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.923 | 0.139 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.944 | 0.166 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.959 | 0.092 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.925 | 0.134 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.962 | 0.160 |
| Mean | Stdev |
15_H3-22_N1-15 | 1.984 | 0.121 |
| Mean | Stdev |
15_O4-22_H61-15 | 1.970 | 0.167 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.958 | 0.113 |
| Mean | Stdev |
16_O4-21_H61-16 | 2.039 | 0.208 |
| Mean | Stdev |
17_H61-20_O4-17 | 2.040 | 0.225 |
| Mean | Stdev |
17_N1-20_H3-17 | 1.979 | 0.127 |
| Mean | Stdev |
18_H1-19_N3-18 | 1.974 | 0.111 |
| Mean | Stdev |
18_H21-19_O2-18 | 1.926 | 0.201 |
| Mean | Stdev |
18_O6-19_H41-18 | 1.995 | 0.189 |
| Mean | Stdev |
2_H1-35_N3-2 | 1.973 | 0.102 |
| Mean | Stdev |
2_H21-35_O2-2 | 1.896 | 0.128 |
| Mean | Stdev |
2_O6-35_H41-2 | 1.994 | 0.183 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.966 | 0.115 |
| Mean | Stdev |
3_O4-34_H61-3 | 2.063 | 0.226 |
| Mean | Stdev |
4_H3-33_N1-4 | 2.050 | 0.171 |
| Mean | Stdev |
4_O4-33_H61-4 | 1.951 | 0.168 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.041 | 0.208 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.952 | 0.110 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.969 | 0.090 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.893 | 0.122 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.952 | 0.149 |
| Mean | Stdev |
7_H1-30_N3-7 | 1.958 | 0.089 |
| Mean | Stdev |
7_H21-30_O2-7 | 1.886 | 0.119 |
| Mean | Stdev |
7_O6-30_H41-7 | 1.949 | 0.152 |
| Mean | Stdev |
8_H1-29_N3-8 | 1.955 | 0.092 |
| Mean | Stdev |
8_H21-29_O2-8 | 1.873 | 0.113 |
| Mean | Stdev |
8_O6-29_H41-8 | 1.986 | 0.164 |
| Mean | Stdev |
9_H3-28_N1-9 | 1.951 | 0.103 |
| Mean | Stdev |
9_O4-28_H61-9 | 2.001 | 0.169 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H3-N1_1-36 | 2.3118 | 1.3032 |
1 | O4-H61_1-36 | 2.3864 | 1.3283 |
2 | O6-H41_2-35 | 1.9938 | 0.1831 |
2 | H1-N3_2-35 | 1.9732 | 0.1017 |
2 | H21-O2_2-35 | 1.8964 | 0.1282 |
3 | H3-N1_3-34 | 1.9665 | 0.1154 |
3 | O4-H61_3-34 | 2.0633 | 0.2259 |
4 | H3-N1_4-33 | 2.0497 | 0.1706 |
4 | O4-H61_4-33 | 1.9507 | 0.1680 |
5 | N1-H3_5-32 | 1.9521 | 0.1104 |
5 | H61-O4_5-32 | 2.0407 | 0.2079 |
6 | O6-H41_6-31 | 1.9525 | 0.1490 |
6 | H1-N3_6-31 | 1.9694 | 0.0897 |
6 | H21-O2_6-31 | 1.8930 | 0.1221 |
7 | O6-H41_7-30 | 1.9490 | 0.1519 |
7 | H1-N3_7-30 | 1.9581 | 0.0890 |
7 | H21-O2_7-30 | 1.8861 | 0.1191 |
8 | O6-H41_8-29 | 1.9865 | 0.1643 |
8 | H1-N3_8-29 | 1.9551 | 0.0922 |
8 | H21-O2_8-29 | 1.8732 | 0.1126 |
9 | H3-N1_9-28 | 1.9508 | 0.1030 |
9 | O4-H61_9-28 | 2.0012 | 0.1690 |
10 | H3-N1_10-27 | 1.9624 | 0.1198 |
10 | O4-H61_10-27 | 2.0682 | 0.2311 |
11 | N1-H3_11-26 | 1.9566 | 0.1190 |
11 | H61-O4_11-26 | 2.0459 | 0.2210 |
12 | O6-H41_12-25 | 1.9942 | 0.1686 |
12 | H1-N3_12-25 | 1.9566 | 0.0906 |
12 | H21-O2_12-25 | 1.8778 | 0.1141 |
13 | O6-H41_13-24 | 1.9436 | 0.1664 |
13 | H1-N3_13-24 | 1.9581 | 0.0923 |
13 | H21-O2_13-24 | 1.9235 | 0.1389 |
14 | O6-H41_14-23 | 1.9615 | 0.1599 |
14 | H1-N3_14-23 | 1.9590 | 0.0917 |
14 | H21-O2_14-23 | 1.9250 | 0.1340 |
15 | H3-N1_15-22 | 1.9843 | 0.1214 |
15 | O4-H61_15-22 | 1.9699 | 0.1669 |
16 | H3-N1_16-21 | 1.9582 | 0.1131 |
16 | O4-H61_16-21 | 2.0393 | 0.2077 |
17 | N1-H3_17-20 | 1.9791 | 0.1266 |
17 | H61-O4_17-20 | 2.0398 | 0.2245 |
18 | O6-H41_18-19 | 1.9951 | 0.1893 |
18 | H1-N3_18-19 | 1.9744 | 0.1114 |
18 | H21-O2_18-19 | 1.9259 | 0.2005 |