Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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19 |
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20 |
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5' |
C |
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T |
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C |
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G |
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G |
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C |
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T |
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A |
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T |
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T |
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A |
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A |
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T |
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A |
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G |
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C |
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C |
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G |
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A |
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G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
- |
A |
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G |
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C |
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C |
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G |
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A |
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T |
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A |
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A |
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T |
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T |
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A |
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T |
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C |
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G |
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G |
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C |
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T |
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C |
5' |
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40 |
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39 |
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38 |
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37 |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-40_O6-1 | 2.031 | 0.223 |
| Mean | Stdev |
1_N3-40_H1-1 | 1.983 | 0.153 |
| Mean | Stdev |
1_O2-40_H21-1 | 1.962 | 0.296 |
| Mean | Stdev |
10_H3-31_N1-10 | 1.964 | 0.124 |
| Mean | Stdev |
10_O4-31_H61-10 | 2.033 | 0.224 |
| Mean | Stdev |
11_H61-30_O4-11 | 2.029 | 0.219 |
| Mean | Stdev |
11_N1-30_H3-11 | 1.957 | 0.116 |
| Mean | Stdev |
12_H61-29_O4-12 | 2.018 | 0.188 |
| Mean | Stdev |
12_N1-29_H3-12 | 1.988 | 0.124 |
| Mean | Stdev |
13_H3-28_N1-13 | 1.998 | 0.126 |
| Mean | Stdev |
13_O4-28_H61-13 | 2.014 | 0.197 |
| Mean | Stdev |
14_H61-27_O4-14 | 2.035 | 0.214 |
| Mean | Stdev |
14_N1-27_H3-14 | 1.950 | 0.110 |
| Mean | Stdev |
15_H1-26_N3-15 | 1.967 | 0.092 |
| Mean | Stdev |
15_H21-26_O2-15 | 1.903 | 0.127 |
| Mean | Stdev |
15_O6-26_H41-15 | 1.987 | 0.167 |
| Mean | Stdev |
16_H41-25_O6-16 | 1.953 | 0.153 |
| Mean | Stdev |
16_N3-25_H1-16 | 1.960 | 0.090 |
| Mean | Stdev |
16_O2-25_H21-16 | 1.912 | 0.129 |
| Mean | Stdev |
17_H41-24_O6-17 | 1.960 | 0.157 |
| Mean | Stdev |
17_N3-24_H1-17 | 1.959 | 0.089 |
| Mean | Stdev |
17_O2-24_H21-17 | 1.878 | 0.117 |
| Mean | Stdev |
18_H1-23_N3-18 | 1.970 | 0.091 |
| Mean | Stdev |
18_H21-23_O2-18 | 1.886 | 0.119 |
| Mean | Stdev |
18_O6-23_H41-18 | 1.966 | 0.155 |
| Mean | Stdev |
19_H61-22_O4-19 | 1.986 | 0.182 |
| Mean | Stdev |
19_N1-22_H3-19 | 1.976 | 0.119 |
| Mean | Stdev |
2_H3-39_N1-2 | 1.976 | 0.120 |
| Mean | Stdev |
2_O4-39_H61-2 | 1.975 | 0.173 |
| Mean | Stdev |
20_H1-21_N3-20 | 1.972 | 0.104 |
| Mean | Stdev |
20_H21-21_O2-20 | 1.942 | 0.158 |
| Mean | Stdev |
20_O6-21_H41-20 | 2.042 | 0.227 |
| Mean | Stdev |
3_H41-38_O6-3 | 1.964 | 0.159 |
| Mean | Stdev |
3_N3-38_H1-3 | 1.970 | 0.093 |
| Mean | Stdev |
3_O2-38_H21-3 | 1.881 | 0.118 |
| Mean | Stdev |
4_H1-37_N3-4 | 1.964 | 0.098 |
| Mean | Stdev |
4_H21-37_O2-4 | 1.883 | 0.118 |
| Mean | Stdev |
4_O6-37_H41-4 | 1.968 | 0.188 |
| Mean | Stdev |
5_H1-36_N3-5 | 1.960 | 0.089 |
| Mean | Stdev |
5_H21-36_O2-5 | 1.908 | 0.129 |
| Mean | Stdev |
5_O6-36_H41-5 | 1.954 | 0.155 |
| Mean | Stdev |
6_H41-35_O6-6 | 1.982 | 0.160 |
| Mean | Stdev |
6_N3-35_H1-6 | 1.968 | 0.093 |
| Mean | Stdev |
6_O2-35_H21-6 | 1.907 | 0.128 |
| Mean | Stdev |
7_H3-34_N1-7 | 1.950 | 0.110 |
| Mean | Stdev |
7_O4-34_H61-7 | 2.054 | 0.228 |
| Mean | Stdev |
8_H61-33_O4-8 | 2.006 | 0.193 |
| Mean | Stdev |
8_N1-33_H3-8 | 1.995 | 0.126 |
| Mean | Stdev |
9_H3-32_N1-9 | 1.989 | 0.125 |
| Mean | Stdev |
9_O4-32_H61-9 | 2.006 | 0.184 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-40 | 2.0307 | 0.2229 |
1 | N3-H1_1-40 | 1.9826 | 0.1529 |
1 | O2-H21_1-40 | 1.9620 | 0.2960 |
2 | H3-N1_2-39 | 1.9760 | 0.1204 |
2 | O4-H61_2-39 | 1.9752 | 0.1731 |
3 | H41-O6_3-38 | 1.9639 | 0.1594 |
3 | N3-H1_3-38 | 1.9698 | 0.0930 |
3 | O2-H21_3-38 | 1.8809 | 0.1181 |
4 | O6-H41_4-37 | 1.9681 | 0.1882 |
4 | H1-N3_4-37 | 1.9637 | 0.0981 |
4 | H21-O2_4-37 | 1.8832 | 0.1184 |
5 | O6-H41_5-36 | 1.9541 | 0.1554 |
5 | H1-N3_5-36 | 1.9603 | 0.0890 |
5 | H21-O2_5-36 | 1.9084 | 0.1293 |
6 | H41-O6_6-35 | 1.9822 | 0.1604 |
6 | N3-H1_6-35 | 1.9684 | 0.0929 |
6 | O2-H21_6-35 | 1.9071 | 0.1281 |
7 | H3-N1_7-34 | 1.9499 | 0.1101 |
7 | O4-H61_7-34 | 2.0540 | 0.2280 |
8 | N1-H3_8-33 | 1.9950 | 0.1259 |
8 | H61-O4_8-33 | 2.0064 | 0.1932 |
9 | H3-N1_9-32 | 1.9893 | 0.1254 |
9 | O4-H61_9-32 | 2.0060 | 0.1839 |
10 | H3-N1_10-31 | 1.9643 | 0.1245 |
10 | O4-H61_10-31 | 2.0333 | 0.2238 |
11 | N1-H3_11-30 | 1.9570 | 0.1159 |
11 | H61-O4_11-30 | 2.0293 | 0.2186 |
12 | N1-H3_12-29 | 1.9880 | 0.1237 |
12 | H61-O4_12-29 | 2.0183 | 0.1882 |
13 | H3-N1_13-28 | 1.9979 | 0.1258 |
13 | O4-H61_13-28 | 2.0137 | 0.1966 |
14 | N1-H3_14-27 | 1.9499 | 0.1098 |
14 | H61-O4_14-27 | 2.0351 | 0.2139 |
15 | O6-H41_15-26 | 1.9868 | 0.1666 |
15 | H1-N3_15-26 | 1.9668 | 0.0924 |
15 | H21-O2_15-26 | 1.9025 | 0.1267 |
16 | H41-O6_16-25 | 1.9532 | 0.1531 |
16 | N3-H1_16-25 | 1.9601 | 0.0904 |
16 | O2-H21_16-25 | 1.9116 | 0.1286 |
17 | H41-O6_17-24 | 1.9605 | 0.1568 |
17 | N3-H1_17-24 | 1.9593 | 0.0887 |
17 | O2-H21_17-24 | 1.8778 | 0.1165 |
18 | O6-H41_18-23 | 1.9659 | 0.1548 |
18 | H1-N3_18-23 | 1.9699 | 0.0910 |
18 | H21-O2_18-23 | 1.8861 | 0.1195 |
19 | N1-H3_19-22 | 1.9763 | 0.1186 |
19 | H61-O4_19-22 | 1.9864 | 0.1822 |
20 | O6-H41_20-21 | 2.0418 | 0.2272 |
20 | H1-N3_20-21 | 1.9724 | 0.1040 |
20 | H21-O2_20-21 | 1.9422 | 0.1575 |