Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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19 |
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20 |
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5' |
C |
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G |
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A |
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C |
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C |
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A |
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T |
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T |
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A |
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A |
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G |
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G |
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G |
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T |
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A |
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C |
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G |
3' |
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3' |
G |
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C |
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G |
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G |
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G |
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T |
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A |
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T |
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C |
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C |
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5' |
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40 |
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39 |
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38 |
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37 |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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28 |
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27 |
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25 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-40_O6-1 | 3.353 | 2.469 |
| Mean | Stdev |
1_N3-40_H1-1 | 3.226 | 2.366 |
| Mean | Stdev |
1_O2-40_H21-1 | 3.170 | 2.439 |
| Mean | Stdev |
10_H3-31_N1-10 | 1.954 | 0.130 |
| Mean | Stdev |
10_O4-31_H61-10 | 2.037 | 0.253 |
| Mean | Stdev |
11_H61-30_O4-11 | 2.034 | 0.218 |
| Mean | Stdev |
11_N1-30_H3-11 | 1.963 | 0.118 |
| Mean | Stdev |
12_H61-29_O4-12 | 2.013 | 0.184 |
| Mean | Stdev |
12_N1-29_H3-12 | 1.988 | 0.121 |
| Mean | Stdev |
13_H3-28_N1-13 | 1.984 | 0.117 |
| Mean | Stdev |
13_O4-28_H61-13 | 1.989 | 0.173 |
| Mean | Stdev |
14_H1-27_N3-14 | 1.965 | 0.093 |
| Mean | Stdev |
14_H21-27_O2-14 | 1.863 | 0.112 |
| Mean | Stdev |
14_O6-27_H41-14 | 1.973 | 0.171 |
| Mean | Stdev |
15_H1-26_N3-15 | 1.960 | 0.091 |
| Mean | Stdev |
15_H21-26_O2-15 | 1.904 | 0.127 |
| Mean | Stdev |
15_O6-26_H41-15 | 1.960 | 0.160 |
| Mean | Stdev |
16_H1-25_N3-16 | 1.964 | 0.094 |
| Mean | Stdev |
16_H21-25_O2-16 | 1.898 | 0.125 |
| Mean | Stdev |
16_O6-25_H41-16 | 1.965 | 0.155 |
| Mean | Stdev |
17_H3-24_N1-17 | 2.002 | 0.314 |
| Mean | Stdev |
17_O4-24_H61-17 | 2.027 | 0.368 |
| Mean | Stdev |
18_H61-23_O4-18 | 1.996 | 0.195 |
| Mean | Stdev |
18_N1-23_H3-18 | 1.993 | 0.131 |
| Mean | Stdev |
19_H41-22_O6-19 | 1.971 | 0.162 |
| Mean | Stdev |
19_N3-22_H1-19 | 1.974 | 0.100 |
| Mean | Stdev |
19_O2-22_H21-19 | 1.891 | 0.126 |
| Mean | Stdev |
2_H1-39_N3-2 | 1.978 | 0.106 |
| Mean | Stdev |
2_H21-39_O2-2 | 1.894 | 0.128 |
| Mean | Stdev |
2_O6-39_H41-2 | 1.981 | 0.182 |
| Mean | Stdev |
20_H1-21_N3-20 | 2.643 | 1.721 |
| Mean | Stdev |
20_H21-21_O2-20 | 2.567 | 1.705 |
| Mean | Stdev |
20_O6-21_H41-20 | 2.788 | 1.935 |
| Mean | Stdev |
3_H3-38_N1-3 | 2.001 | 0.134 |
| Mean | Stdev |
3_O4-38_H61-3 | 1.974 | 0.185 |
| Mean | Stdev |
4_H61-37_O4-4 | 2.010 | 0.213 |
| Mean | Stdev |
4_N1-37_H3-4 | 1.974 | 0.141 |
| Mean | Stdev |
5_H41-36_O6-5 | 1.963 | 0.150 |
| Mean | Stdev |
5_N3-36_H1-5 | 1.966 | 0.093 |
| Mean | Stdev |
5_O2-36_H21-5 | 1.900 | 0.122 |
| Mean | Stdev |
6_H41-35_O6-6 | 1.960 | 0.160 |
| Mean | Stdev |
6_N3-35_H1-6 | 1.960 | 0.089 |
| Mean | Stdev |
6_O2-35_H21-6 | 1.894 | 0.121 |
| Mean | Stdev |
7_H41-34_O6-7 | 1.975 | 0.169 |
| Mean | Stdev |
7_N3-34_H1-7 | 1.966 | 0.094 |
| Mean | Stdev |
7_O2-34_H21-7 | 1.864 | 0.108 |
| Mean | Stdev |
8_H61-33_O4-8 | 1.987 | 0.176 |
| Mean | Stdev |
8_N1-33_H3-8 | 1.986 | 0.120 |
| Mean | Stdev |
9_H3-32_N1-9 | 1.985 | 0.121 |
| Mean | Stdev |
9_O4-32_H61-9 | 2.015 | 0.183 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-40 | 3.3531 | 2.4689 |
1 | N3-H1_1-40 | 3.2262 | 2.3664 |
1 | O2-H21_1-40 | 3.1703 | 2.4386 |
2 | O6-H41_2-39 | 1.9811 | 0.1818 |
2 | H1-N3_2-39 | 1.9775 | 0.1065 |
2 | H21-O2_2-39 | 1.8940 | 0.1282 |
3 | H3-N1_3-38 | 2.0012 | 0.1335 |
3 | O4-H61_3-38 | 1.9737 | 0.1848 |
4 | N1-H3_4-37 | 1.9742 | 0.1408 |
4 | H61-O4_4-37 | 2.0103 | 0.2132 |
5 | H41-O6_5-36 | 1.9632 | 0.1496 |
5 | N3-H1_5-36 | 1.9658 | 0.0929 |
5 | O2-H21_5-36 | 1.9002 | 0.1225 |
6 | H41-O6_6-35 | 1.9603 | 0.1602 |
6 | N3-H1_6-35 | 1.9604 | 0.0892 |
6 | O2-H21_6-35 | 1.8944 | 0.1209 |
7 | H41-O6_7-34 | 1.9746 | 0.1686 |
7 | N3-H1_7-34 | 1.9664 | 0.0937 |
7 | O2-H21_7-34 | 1.8643 | 0.1085 |
8 | N1-H3_8-33 | 1.9857 | 0.1202 |
8 | H61-O4_8-33 | 1.9866 | 0.1763 |
9 | H3-N1_9-32 | 1.9850 | 0.1213 |
9 | O4-H61_9-32 | 2.0152 | 0.1833 |
10 | H3-N1_10-31 | 1.9542 | 0.1299 |
10 | O4-H61_10-31 | 2.0365 | 0.2528 |
11 | N1-H3_11-30 | 1.9627 | 0.1176 |
11 | H61-O4_11-30 | 2.0341 | 0.2177 |
12 | N1-H3_12-29 | 1.9875 | 0.1207 |
12 | H61-O4_12-29 | 2.0128 | 0.1843 |
13 | H3-N1_13-28 | 1.9845 | 0.1169 |
13 | O4-H61_13-28 | 1.9890 | 0.1733 |
14 | O6-H41_14-27 | 1.9729 | 0.1708 |
14 | H1-N3_14-27 | 1.9646 | 0.0929 |
14 | H21-O2_14-27 | 1.8629 | 0.1124 |
15 | O6-H41_15-26 | 1.9596 | 0.1597 |
15 | H1-N3_15-26 | 1.9601 | 0.0913 |
15 | H21-O2_15-26 | 1.9038 | 0.1272 |
16 | O6-H41_16-25 | 1.9652 | 0.1553 |
16 | H1-N3_16-25 | 1.9636 | 0.0938 |
16 | H21-O2_16-25 | 1.8979 | 0.1248 |
17 | H3-N1_17-24 | 2.0025 | 0.3141 |
17 | O4-H61_17-24 | 2.0272 | 0.3677 |
18 | N1-H3_18-23 | 1.9928 | 0.1308 |
18 | H61-O4_18-23 | 1.9955 | 0.1946 |
19 | H41-O6_19-22 | 1.9707 | 0.1615 |
19 | N3-H1_19-22 | 1.9744 | 0.0996 |
19 | O2-H21_19-22 | 1.8905 | 0.1256 |
20 | O6-H41_20-21 | 2.7884 | 1.9346 |
20 | H1-N3_20-21 | 2.6427 | 1.7214 |
20 | H21-O2_20-21 | 2.5667 | 1.7047 |