Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
|
1 |
|
2 |
|
3 |
|
4 |
|
5 |
|
6 |
|
7 |
|
8 |
|
9 |
|
10 |
|
11 |
|
12 |
|
13 |
|
14 |
|
15 |
|
16 |
|
17 |
|
18 |
|
19 |
|
20 |
|
21 |
|
22 |
|
23 |
|
5' |
C |
- |
A |
- |
C |
- |
A |
- |
G |
- |
G |
- |
A |
- |
T |
- |
G |
- |
T |
- |
C |
- |
C |
- |
A |
- |
T |
- |
A |
- |
T |
- |
T |
- |
A |
- |
G |
- |
G |
- |
A |
- |
C |
- |
A |
3' |
|
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
x |
| |
3' |
G |
- |
T |
- |
G |
- |
T |
- |
C |
- |
C |
- |
T |
- |
A |
- |
C |
- |
A |
- |
G |
- |
G |
- |
T |
- |
A |
- |
T |
- |
A |
- |
A |
- |
T |
- |
C |
- |
C |
- |
T |
- |
G |
- |
T |
5' |
|
46 |
|
45 |
|
44 |
|
43 |
|
42 |
|
41 |
|
40 |
|
39 |
|
38 |
|
37 |
|
36 |
|
35 |
|
34 |
|
33 |
|
32 |
|
31 |
|
30 |
|
29 |
|
28 |
|
27 |
|
26 |
|
25 |
|
24 |
|
Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-46_O6-1 | 2.309 | 1.364 |
| Mean | Stdev |
1_N3-46_H1-1 | 2.245 | 1.227 |
| Mean | Stdev |
1_O2-46_H21-1 | 2.189 | 1.220 |
| Mean | Stdev |
10_H3-37_N1-10 | 1.989 | 0.129 |
| Mean | Stdev |
10_O4-37_H61-10 | 1.969 | 0.175 |
| Mean | Stdev |
11_H41-36_O6-11 | 1.956 | 0.150 |
| Mean | Stdev |
11_N3-36_H1-11 | 1.969 | 0.091 |
| Mean | Stdev |
11_O2-36_H21-11 | 1.921 | 0.136 |
| Mean | Stdev |
12_H41-35_O6-12 | 1.966 | 0.162 |
| Mean | Stdev |
12_N3-35_H1-12 | 1.966 | 0.092 |
| Mean | Stdev |
12_O2-35_H21-12 | 1.878 | 0.119 |
| Mean | Stdev |
13_H61-34_O4-13 | 2.027 | 0.192 |
| Mean | Stdev |
13_N1-34_H3-13 | 1.979 | 0.118 |
| Mean | Stdev |
14_H3-33_N1-14 | 1.987 | 0.284 |
| Mean | Stdev |
14_O4-33_H61-14 | 2.085 | 0.340 |
| Mean | Stdev |
15_H61-32_O4-15 | 2.014 | 0.201 |
| Mean | Stdev |
15_N1-32_H3-15 | 1.985 | 0.125 |
| Mean | Stdev |
16_H3-31_N1-16 | 1.982 | 0.119 |
| Mean | Stdev |
16_O4-31_H61-16 | 2.014 | 0.184 |
| Mean | Stdev |
17_H3-30_N1-17 | 1.956 | 0.115 |
| Mean | Stdev |
17_O4-30_H61-17 | 2.041 | 0.212 |
| Mean | Stdev |
18_H61-29_O4-18 | 2.021 | 0.208 |
| Mean | Stdev |
18_N1-29_H3-18 | 1.972 | 0.123 |
| Mean | Stdev |
19_H1-28_N3-19 | 1.963 | 0.090 |
| Mean | Stdev |
19_H21-28_O2-19 | 1.897 | 0.124 |
| Mean | Stdev |
19_O6-28_H41-19 | 1.970 | 0.168 |
| Mean | Stdev |
2_H61-45_O4-2 | 1.967 | 0.179 |
| Mean | Stdev |
2_N1-45_H3-2 | 1.983 | 0.127 |
| Mean | Stdev |
20_H1-27_N3-20 | 1.960 | 0.091 |
| Mean | Stdev |
20_H21-27_O2-20 | 1.905 | 0.126 |
| Mean | Stdev |
20_O6-27_H41-20 | 1.954 | 0.153 |
| Mean | Stdev |
21_H61-26_O4-21 | 1.986 | 0.183 |
| Mean | Stdev |
21_N1-26_H3-21 | 1.999 | 0.134 |
| Mean | Stdev |
22_H41-25_O6-22 | 2.017 | 0.288 |
| Mean | Stdev |
22_N3-25_H1-22 | 1.988 | 0.145 |
| Mean | Stdev |
22_O2-25_H21-22 | 1.888 | 0.127 |
| Mean | Stdev |
23_H61-24_O4-23 | 5.884 | 2.324 |
| Mean | Stdev |
23_N1-24_H3-23 | 5.429 | 2.124 |
| Mean | Stdev |
3_H41-44_O6-3 | 1.988 | 0.172 |
| Mean | Stdev |
3_N3-44_H1-3 | 1.992 | 0.104 |
| Mean | Stdev |
3_O2-44_H21-3 | 1.896 | 0.126 |
| Mean | Stdev |
4_H61-43_O4-4 | 2.010 | 0.193 |
| Mean | Stdev |
4_N1-43_H3-4 | 1.956 | 0.111 |
| Mean | Stdev |
5_H1-42_N3-5 | 1.966 | 0.093 |
| Mean | Stdev |
5_H21-42_O2-5 | 1.898 | 0.131 |
| Mean | Stdev |
5_O6-42_H41-5 | 1.985 | 0.172 |
| Mean | Stdev |
6_H1-41_N3-6 | 1.967 | 0.173 |
| Mean | Stdev |
6_H21-41_O2-6 | 1.927 | 0.188 |
| Mean | Stdev |
6_O6-41_H41-6 | 1.963 | 0.248 |
| Mean | Stdev |
7_H61-40_O4-7 | 2.024 | 0.195 |
| Mean | Stdev |
7_N1-40_H3-7 | 1.978 | 0.118 |
| Mean | Stdev |
8_H3-39_N1-8 | 1.969 | 0.114 |
| Mean | Stdev |
8_O4-39_H61-8 | 2.022 | 0.196 |
| Mean | Stdev |
9_H1-38_N3-9 | 1.982 | 0.110 |
| Mean | Stdev |
9_H21-38_O2-9 | 1.881 | 0.118 |
| Mean | Stdev |
9_O6-38_H41-9 | 1.995 | 0.206 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-46 | 2.3089 | 1.3641 |
1 | N3-H1_1-46 | 2.2452 | 1.2271 |
1 | O2-H21_1-46 | 2.1888 | 1.2199 |
2 | N1-H3_2-45 | 1.9833 | 0.1268 |
2 | H61-O4_2-45 | 1.9669 | 0.1786 |
3 | H41-O6_3-44 | 1.9881 | 0.1716 |
3 | N3-H1_3-44 | 1.9919 | 0.1040 |
3 | O2-H21_3-44 | 1.8960 | 0.1261 |
4 | N1-H3_4-43 | 1.9565 | 0.1109 |
4 | H61-O4_4-43 | 2.0102 | 0.1927 |
5 | O6-H41_5-42 | 1.9854 | 0.1723 |
5 | H1-N3_5-42 | 1.9660 | 0.0927 |
5 | H21-O2_5-42 | 1.8978 | 0.1310 |
6 | O6-H41_6-41 | 1.9631 | 0.2480 |
6 | H1-N3_6-41 | 1.9670 | 0.1735 |
6 | H21-O2_6-41 | 1.9270 | 0.1875 |
7 | N1-H3_7-40 | 1.9784 | 0.1179 |
7 | H61-O4_7-40 | 2.0239 | 0.1946 |
8 | H3-N1_8-39 | 1.9693 | 0.1142 |
8 | O4-H61_8-39 | 2.0222 | 0.1961 |
9 | O6-H41_9-38 | 1.9954 | 0.2062 |
9 | H1-N3_9-38 | 1.9821 | 0.1104 |
9 | H21-O2_9-38 | 1.8813 | 0.1183 |
10 | H3-N1_10-37 | 1.9894 | 0.1290 |
10 | O4-H61_10-37 | 1.9691 | 0.1753 |
11 | H41-O6_11-36 | 1.9555 | 0.1498 |
11 | N3-H1_11-36 | 1.9686 | 0.0910 |
11 | O2-H21_11-36 | 1.9211 | 0.1359 |
12 | H41-O6_12-35 | 1.9663 | 0.1620 |
12 | N3-H1_12-35 | 1.9659 | 0.0922 |
12 | O2-H21_12-35 | 1.8779 | 0.1188 |
13 | N1-H3_13-34 | 1.9790 | 0.1180 |
13 | H61-O4_13-34 | 2.0274 | 0.1924 |
14 | H3-N1_14-33 | 1.9874 | 0.2841 |
14 | O4-H61_14-33 | 2.0851 | 0.3402 |
15 | N1-H3_15-32 | 1.9854 | 0.1250 |
15 | H61-O4_15-32 | 2.0144 | 0.2014 |
16 | H3-N1_16-31 | 1.9822 | 0.1195 |
16 | O4-H61_16-31 | 2.0145 | 0.1838 |
17 | H3-N1_17-30 | 1.9562 | 0.1150 |
17 | O4-H61_17-30 | 2.0406 | 0.2125 |
18 | N1-H3_18-29 | 1.9716 | 0.1234 |
18 | H61-O4_18-29 | 2.0206 | 0.2079 |
19 | O6-H41_19-28 | 1.9705 | 0.1679 |
19 | H1-N3_19-28 | 1.9626 | 0.0904 |
19 | H21-O2_19-28 | 1.8967 | 0.1237 |
20 | O6-H41_20-27 | 1.9541 | 0.1530 |
20 | H1-N3_20-27 | 1.9605 | 0.0909 |
20 | H21-O2_20-27 | 1.9054 | 0.1257 |
21 | N1-H3_21-26 | 1.9987 | 0.1339 |
21 | H61-O4_21-26 | 1.9858 | 0.1831 |
22 | H41-O6_22-25 | 2.0174 | 0.2876 |
22 | N3-H1_22-25 | 1.9884 | 0.1453 |
22 | O2-H21_22-25 | 1.8882 | 0.1274 |
23 | N1-H3_23-24 | 5.4291 | 2.1245 |
23 | H61-O4_23-24 | 5.8837 | 2.3239 |