Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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A |
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A |
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A |
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T |
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T |
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A |
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A |
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A |
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G |
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C |
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G |
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C |
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A |
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A |
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G |
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A |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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T |
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T |
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T |
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A |
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A |
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T |
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T |
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T |
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C |
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G |
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C |
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G |
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T |
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T |
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C |
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T |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.000 | 0.122 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.930 | 0.161 |
| Mean | Stdev |
1_O6-36_H41-1 | 1.981 | 0.200 |
| Mean | Stdev |
10_H61-27_O4-10 | 2.009 | 0.182 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.941 | 0.106 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.961 | 0.099 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.900 | 0.125 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.955 | 0.175 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.969 | 0.167 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.965 | 0.092 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.884 | 0.119 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.971 | 0.090 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.909 | 0.127 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.947 | 0.144 |
| Mean | Stdev |
14_H41-23_O6-14 | 1.946 | 0.144 |
| Mean | Stdev |
14_N3-23_H1-14 | 1.973 | 0.091 |
| Mean | Stdev |
14_O2-23_H21-14 | 1.906 | 0.129 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.005 | 0.191 |
| Mean | Stdev |
15_N1-22_H3-15 | 1.962 | 0.115 |
| Mean | Stdev |
16_H61-21_O4-16 | 2.010 | 0.186 |
| Mean | Stdev |
16_N1-21_H3-16 | 1.963 | 0.118 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.965 | 0.106 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.903 | 0.131 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.998 | 0.208 |
| Mean | Stdev |
18_H61-19_O4-18 | 4.517 | 3.771 |
| Mean | Stdev |
18_N1-19_H3-18 | 4.118 | 3.299 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.960 | 0.151 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.974 | 0.093 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.891 | 0.122 |
| Mean | Stdev |
3_H61-34_O4-3 | 1.994 | 0.184 |
| Mean | Stdev |
3_N1-34_H3-3 | 1.965 | 0.115 |
| Mean | Stdev |
4_H61-33_O4-4 | 1.976 | 0.162 |
| Mean | Stdev |
4_N1-33_H3-4 | 1.977 | 0.121 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.013 | 0.181 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.974 | 0.117 |
| Mean | Stdev |
6_H3-31_N1-6 | 1.989 | 0.119 |
| Mean | Stdev |
6_O4-31_H61-6 | 2.015 | 0.184 |
| Mean | Stdev |
7_H3-30_N1-7 | 1.957 | 0.116 |
| Mean | Stdev |
7_O4-30_H61-7 | 2.043 | 0.225 |
| Mean | Stdev |
8_H61-29_O4-8 | 2.012 | 0.203 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.975 | 0.127 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.996 | 0.175 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.967 | 0.113 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 1.9806 | 0.1998 |
1 | H1-N3_1-36 | 2.0001 | 0.1223 |
1 | H21-O2_1-36 | 1.9296 | 0.1611 |
2 | H41-O6_2-35 | 1.9599 | 0.1509 |
2 | N3-H1_2-35 | 1.9739 | 0.0927 |
2 | O2-H21_2-35 | 1.8910 | 0.1219 |
3 | N1-H3_3-34 | 1.9649 | 0.1154 |
3 | H61-O4_3-34 | 1.9943 | 0.1840 |
4 | N1-H3_4-33 | 1.9766 | 0.1215 |
4 | H61-O4_4-33 | 1.9758 | 0.1616 |
5 | N1-H3_5-32 | 1.9742 | 0.1168 |
5 | H61-O4_5-32 | 2.0125 | 0.1807 |
6 | H3-N1_6-31 | 1.9890 | 0.1191 |
6 | O4-H61_6-31 | 2.0154 | 0.1839 |
7 | H3-N1_7-30 | 1.9571 | 0.1160 |
7 | O4-H61_7-30 | 2.0435 | 0.2250 |
8 | N1-H3_8-29 | 1.9754 | 0.1271 |
8 | H61-O4_8-29 | 2.0124 | 0.2027 |
9 | N1-H3_9-28 | 1.9670 | 0.1127 |
9 | H61-O4_9-28 | 1.9955 | 0.1746 |
10 | N1-H3_10-27 | 1.9412 | 0.1056 |
10 | H61-O4_10-27 | 2.0090 | 0.1820 |
11 | O6-H41_11-26 | 1.9549 | 0.1747 |
11 | H1-N3_11-26 | 1.9611 | 0.0987 |
11 | H21-O2_11-26 | 1.9001 | 0.1249 |
12 | H41-O6_12-25 | 1.9686 | 0.1667 |
12 | N3-H1_12-25 | 1.9648 | 0.0922 |
12 | O2-H21_12-25 | 1.8839 | 0.1191 |
13 | O6-H41_13-24 | 1.9470 | 0.1436 |
13 | H1-N3_13-24 | 1.9706 | 0.0903 |
13 | H21-O2_13-24 | 1.9092 | 0.1267 |
14 | H41-O6_14-23 | 1.9461 | 0.1440 |
14 | N3-H1_14-23 | 1.9734 | 0.0913 |
14 | O2-H21_14-23 | 1.9063 | 0.1287 |
15 | N1-H3_15-22 | 1.9618 | 0.1145 |
15 | H61-O4_15-22 | 2.0054 | 0.1905 |
16 | N1-H3_16-21 | 1.9627 | 0.1178 |
16 | H61-O4_16-21 | 2.0099 | 0.1859 |
17 | O6-H41_17-20 | 1.9981 | 0.2085 |
17 | H1-N3_17-20 | 1.9650 | 0.1061 |
17 | H21-O2_17-20 | 1.9025 | 0.1310 |
18 | N1-H3_18-19 | 4.1184 | 3.2994 |
18 | H61-O4_18-19 | 4.5166 | 3.7712 |