Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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5' |
G |
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C |
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T |
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T |
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A |
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A |
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A |
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A |
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T |
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A |
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A |
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C |
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A |
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A |
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T |
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A |
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C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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A |
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A |
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T |
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T |
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T |
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T |
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A |
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T |
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T |
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G |
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T |
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T |
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A |
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T |
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G |
5' |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-34_N3-1 | 2.149 | 0.615 |
| Mean | Stdev |
1_H21-34_O2-1 | 2.049 | 0.741 |
| Mean | Stdev |
1_O6-34_H41-1 | 2.376 | 1.394 |
| Mean | Stdev |
10_H61-25_O4-10 | 2.028 | 0.207 |
| Mean | Stdev |
10_N1-25_H3-10 | 1.955 | 0.117 |
| Mean | Stdev |
11_H61-24_O4-11 | 1.983 | 0.169 |
| Mean | Stdev |
11_N1-24_H3-11 | 1.984 | 0.124 |
| Mean | Stdev |
12_H41-23_O6-12 | 1.994 | 0.174 |
| Mean | Stdev |
12_N3-23_H1-12 | 1.984 | 0.102 |
| Mean | Stdev |
12_O2-23_H21-12 | 1.881 | 0.120 |
| Mean | Stdev |
13_H61-22_O4-13 | 1.991 | 0.179 |
| Mean | Stdev |
13_N1-22_H3-13 | 1.966 | 0.116 |
| Mean | Stdev |
14_H61-21_O4-14 | 2.015 | 0.186 |
| Mean | Stdev |
14_N1-21_H3-14 | 1.988 | 0.124 |
| Mean | Stdev |
15_H3-20_N1-15 | 1.983 | 0.119 |
| Mean | Stdev |
15_O4-20_H61-15 | 2.005 | 0.196 |
| Mean | Stdev |
16_H61-19_O4-16 | 2.034 | 0.215 |
| Mean | Stdev |
16_N1-19_H3-16 | 1.974 | 0.121 |
| Mean | Stdev |
17_H41-18_O6-17 | 2.043 | 0.304 |
| Mean | Stdev |
17_N3-18_H1-17 | 2.030 | 0.158 |
| Mean | Stdev |
17_O2-18_H21-17 | 1.915 | 0.146 |
| Mean | Stdev |
2_H41-33_O6-2 | 1.966 | 0.159 |
| Mean | Stdev |
2_N3-33_H1-2 | 1.962 | 0.093 |
| Mean | Stdev |
2_O2-33_H21-2 | 1.896 | 0.126 |
| Mean | Stdev |
3_H3-32_N1-3 | 1.958 | 0.113 |
| Mean | Stdev |
3_O4-32_H61-3 | 2.010 | 0.188 |
| Mean | Stdev |
4_H3-31_N1-4 | 1.969 | 0.136 |
| Mean | Stdev |
4_O4-31_H61-4 | 2.042 | 0.263 |
| Mean | Stdev |
5_H61-30_O4-5 | 2.017 | 0.195 |
| Mean | Stdev |
5_N1-30_H3-5 | 1.967 | 0.122 |
| Mean | Stdev |
6_H61-29_O4-6 | 1.999 | 0.183 |
| Mean | Stdev |
6_N1-29_H3-6 | 1.978 | 0.121 |
| Mean | Stdev |
7_H61-28_O4-7 | 1.981 | 0.168 |
| Mean | Stdev |
7_N1-28_H3-7 | 1.967 | 0.116 |
| Mean | Stdev |
8_H61-27_O4-8 | 2.013 | 0.181 |
| Mean | Stdev |
8_N1-27_H3-8 | 1.975 | 0.119 |
| Mean | Stdev |
9_H3-26_N1-9 | 1.993 | 0.124 |
| Mean | Stdev |
9_O4-26_H61-9 | 2.014 | 0.211 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-34 | 2.3760 | 1.3937 |
1 | H1-N3_1-34 | 2.1493 | 0.6151 |
1 | H21-O2_1-34 | 2.0490 | 0.7412 |
2 | H41-O6_2-33 | 1.9660 | 0.1588 |
2 | N3-H1_2-33 | 1.9616 | 0.0931 |
2 | O2-H21_2-33 | 1.8958 | 0.1257 |
3 | H3-N1_3-32 | 1.9578 | 0.1126 |
3 | O4-H61_3-32 | 2.0097 | 0.1882 |
4 | H3-N1_4-31 | 1.9691 | 0.1361 |
4 | O4-H61_4-31 | 2.0419 | 0.2631 |
5 | N1-H3_5-30 | 1.9670 | 0.1224 |
5 | H61-O4_5-30 | 2.0172 | 0.1951 |
6 | N1-H3_6-29 | 1.9777 | 0.1208 |
6 | H61-O4_6-29 | 1.9992 | 0.1831 |
7 | N1-H3_7-28 | 1.9673 | 0.1156 |
7 | H61-O4_7-28 | 1.9812 | 0.1676 |
8 | N1-H3_8-27 | 1.9751 | 0.1186 |
8 | H61-O4_8-27 | 2.0129 | 0.1812 |
9 | H3-N1_9-26 | 1.9927 | 0.1238 |
9 | O4-H61_9-26 | 2.0136 | 0.2113 |
10 | N1-H3_10-25 | 1.9553 | 0.1170 |
10 | H61-O4_10-25 | 2.0279 | 0.2073 |
11 | N1-H3_11-24 | 1.9843 | 0.1244 |
11 | H61-O4_11-24 | 1.9826 | 0.1693 |
12 | H41-O6_12-23 | 1.9937 | 0.1743 |
12 | N3-H1_12-23 | 1.9844 | 0.1025 |
12 | O2-H21_12-23 | 1.8814 | 0.1199 |
13 | N1-H3_13-22 | 1.9655 | 0.1161 |
13 | H61-O4_13-22 | 1.9910 | 0.1787 |
14 | N1-H3_14-21 | 1.9880 | 0.1237 |
14 | H61-O4_14-21 | 2.0146 | 0.1859 |
15 | H3-N1_15-20 | 1.9827 | 0.1192 |
15 | O4-H61_15-20 | 2.0050 | 0.1962 |
16 | N1-H3_16-19 | 1.9735 | 0.1212 |
16 | H61-O4_16-19 | 2.0343 | 0.2149 |
17 | H41-O6_17-18 | 2.0426 | 0.3040 |
17 | N3-H1_17-18 | 2.0304 | 0.1576 |
17 | O2-H21_17-18 | 1.9149 | 0.1463 |