Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
A |
- |
A |
- |
G |
- |
A |
- |
T |
- |
A |
- |
A |
- |
C |
- |
G |
- |
A |
- |
T |
- |
A |
- |
T |
- |
T |
- |
T |
- |
A |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
T |
- |
T |
- |
C |
- |
T |
- |
A |
- |
T |
- |
T |
- |
G |
- |
C |
- |
T |
- |
A |
- |
T |
- |
A |
- |
A |
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A |
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T |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H61-32_O4-1 | 2.828 | 1.926 |
| Mean | Stdev |
1_N1-32_H3-1 | 2.789 | 1.860 |
| Mean | Stdev |
10_H61-23_O4-10 | 1.996 | 0.180 |
| Mean | Stdev |
10_N1-23_H3-10 | 1.990 | 0.123 |
| Mean | Stdev |
11_H3-22_N1-11 | 1.977 | 0.121 |
| Mean | Stdev |
11_O4-22_H61-11 | 2.037 | 0.207 |
| Mean | Stdev |
12_H61-21_O4-12 | 2.043 | 0.213 |
| Mean | Stdev |
12_N1-21_H3-12 | 1.977 | 0.117 |
| Mean | Stdev |
13_H3-20_N1-13 | 1.970 | 0.114 |
| Mean | Stdev |
13_O4-20_H61-13 | 2.029 | 0.189 |
| Mean | Stdev |
14_H3-19_N1-14 | 1.970 | 0.122 |
| Mean | Stdev |
14_O4-19_H61-14 | 1.998 | 0.178 |
| Mean | Stdev |
15_H3-18_N1-15 | 2.073 | 0.621 |
| Mean | Stdev |
15_O4-18_H61-15 | 2.103 | 0.679 |
| Mean | Stdev |
16_H61-17_O4-16 | 5.592 | 3.199 |
| Mean | Stdev |
16_N1-17_H3-16 | 5.869 | 3.212 |
| Mean | Stdev |
2_H61-31_O4-2 | 2.026 | 0.212 |
| Mean | Stdev |
2_N1-31_H3-2 | 1.959 | 0.121 |
| Mean | Stdev |
3_H1-30_N3-3 | 1.954 | 0.092 |
| Mean | Stdev |
3_H21-30_O2-3 | 1.915 | 0.134 |
| Mean | Stdev |
3_O6-30_H41-3 | 1.973 | 0.166 |
| Mean | Stdev |
4_H61-29_O4-4 | 2.019 | 0.194 |
| Mean | Stdev |
4_N1-29_H3-4 | 1.980 | 0.120 |
| Mean | Stdev |
5_H3-28_N1-5 | 1.992 | 0.127 |
| Mean | Stdev |
5_O4-28_H61-5 | 2.019 | 0.211 |
| Mean | Stdev |
6_H61-27_O4-6 | 2.023 | 0.200 |
| Mean | Stdev |
6_N1-27_H3-6 | 1.955 | 0.110 |
| Mean | Stdev |
7_H61-26_O4-7 | 1.984 | 0.170 |
| Mean | Stdev |
7_N1-26_H3-7 | 1.976 | 0.118 |
| Mean | Stdev |
8_H41-25_O6-8 | 1.978 | 0.162 |
| Mean | Stdev |
8_N3-25_H1-8 | 1.973 | 0.097 |
| Mean | Stdev |
8_O2-25_H21-8 | 1.886 | 0.120 |
| Mean | Stdev |
9_H1-24_N3-9 | 1.959 | 0.090 |
| Mean | Stdev |
9_H21-24_O2-9 | 1.881 | 0.121 |
| Mean | Stdev |
9_O6-24_H41-9 | 1.961 | 0.150 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | N1-H3_1-32 | 2.7894 | 1.8603 |
1 | H61-O4_1-32 | 2.8282 | 1.9262 |
2 | N1-H3_2-31 | 1.9594 | 0.1213 |
2 | H61-O4_2-31 | 2.0264 | 0.2121 |
3 | O6-H41_3-30 | 1.9726 | 0.1662 |
3 | H1-N3_3-30 | 1.9544 | 0.0917 |
3 | H21-O2_3-30 | 1.9152 | 0.1342 |
4 | N1-H3_4-29 | 1.9803 | 0.1204 |
4 | H61-O4_4-29 | 2.0188 | 0.1935 |
5 | H3-N1_5-28 | 1.9915 | 0.1269 |
5 | O4-H61_5-28 | 2.0190 | 0.2109 |
6 | N1-H3_6-27 | 1.9553 | 0.1102 |
6 | H61-O4_6-27 | 2.0226 | 0.2003 |
7 | N1-H3_7-26 | 1.9761 | 0.1182 |
7 | H61-O4_7-26 | 1.9836 | 0.1704 |
8 | H41-O6_8-25 | 1.9775 | 0.1615 |
8 | N3-H1_8-25 | 1.9729 | 0.0973 |
8 | O2-H21_8-25 | 1.8864 | 0.1205 |
9 | O6-H41_9-24 | 1.9609 | 0.1497 |
9 | H1-N3_9-24 | 1.9587 | 0.0900 |
9 | H21-O2_9-24 | 1.8809 | 0.1207 |
10 | N1-H3_10-23 | 1.9895 | 0.1231 |
10 | H61-O4_10-23 | 1.9962 | 0.1802 |
11 | H3-N1_11-22 | 1.9773 | 0.1213 |
11 | O4-H61_11-22 | 2.0366 | 0.2071 |
12 | N1-H3_12-21 | 1.9770 | 0.1169 |
12 | H61-O4_12-21 | 2.0427 | 0.2132 |
13 | H3-N1_13-20 | 1.9696 | 0.1141 |
13 | O4-H61_13-20 | 2.0287 | 0.1891 |
14 | H3-N1_14-19 | 1.9704 | 0.1216 |
14 | O4-H61_14-19 | 1.9976 | 0.1781 |
15 | H3-N1_15-18 | 2.0733 | 0.6208 |
15 | O4-H61_15-18 | 2.1031 | 0.6786 |
16 | N1-H3_16-17 | 5.8687 | 3.2115 |
16 | H61-O4_16-17 | 5.5920 | 3.1986 |