Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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19 |
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20 |
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5' |
A |
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A |
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G |
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T |
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A |
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C |
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A |
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A |
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A |
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C |
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T |
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T |
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T |
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C |
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T |
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T |
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G |
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T |
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A |
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T |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
T |
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T |
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C |
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A |
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T |
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G |
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T |
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T |
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T |
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G |
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A |
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A |
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A |
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G |
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A |
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A |
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C |
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A |
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T |
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A |
5' |
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40 |
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39 |
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38 |
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37 |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H61-40_O4-1 | 3.455 | 2.990 |
| Mean | Stdev |
1_N1-40_H3-1 | 3.399 | 2.939 |
| Mean | Stdev |
10_H41-31_O6-10 | 1.992 | 0.177 |
| Mean | Stdev |
10_N3-31_H1-10 | 1.961 | 0.096 |
| Mean | Stdev |
10_O2-31_H21-10 | 1.874 | 0.115 |
| Mean | Stdev |
11_H3-30_N1-11 | 1.941 | 0.106 |
| Mean | Stdev |
11_O4-30_H61-11 | 2.041 | 0.215 |
| Mean | Stdev |
12_H3-29_N1-12 | 1.968 | 0.122 |
| Mean | Stdev |
12_O4-29_H61-12 | 2.017 | 0.205 |
| Mean | Stdev |
13_H3-28_N1-13 | 1.981 | 0.124 |
| Mean | Stdev |
13_O4-28_H61-13 | 2.017 | 0.203 |
| Mean | Stdev |
14_H41-27_O6-14 | 1.988 | 0.183 |
| Mean | Stdev |
14_N3-27_H1-14 | 1.970 | 0.100 |
| Mean | Stdev |
14_O2-27_H21-14 | 1.898 | 0.130 |
| Mean | Stdev |
15_H3-26_N1-15 | 1.960 | 0.127 |
| Mean | Stdev |
15_O4-26_H61-15 | 2.020 | 0.225 |
| Mean | Stdev |
16_H3-25_N1-16 | 1.967 | 0.116 |
| Mean | Stdev |
16_O4-25_H61-16 | 2.005 | 0.199 |
| Mean | Stdev |
17_H1-24_N3-17 | 1.991 | 0.109 |
| Mean | Stdev |
17_H21-24_O2-17 | 1.887 | 0.121 |
| Mean | Stdev |
17_O6-24_H41-17 | 1.992 | 0.188 |
| Mean | Stdev |
18_H3-23_N1-18 | 2.011 | 0.141 |
| Mean | Stdev |
18_O4-23_H61-18 | 1.942 | 0.159 |
| Mean | Stdev |
19_H61-22_O4-19 | 2.145 | 0.601 |
| Mean | Stdev |
19_N1-22_H3-19 | 2.029 | 0.591 |
| Mean | Stdev |
2_H61-39_O4-2 | 2.380 | 1.694 |
| Mean | Stdev |
2_N1-39_H3-2 | 2.235 | 1.479 |
| Mean | Stdev |
20_H3-21_N1-20 | 4.712 | 1.410 |
| Mean | Stdev |
20_O4-21_H61-20 | 3.860 | 1.483 |
| Mean | Stdev |
3_H1-38_N3-3 | 1.969 | 0.100 |
| Mean | Stdev |
3_H21-38_O2-3 | 1.897 | 0.127 |
| Mean | Stdev |
3_O6-38_H41-3 | 1.999 | 0.184 |
| Mean | Stdev |
4_H3-37_N1-4 | 1.982 | 0.168 |
| Mean | Stdev |
4_O4-37_H61-4 | 2.003 | 0.258 |
| Mean | Stdev |
5_H61-36_O4-5 | 1.982 | 0.183 |
| Mean | Stdev |
5_N1-36_H3-5 | 1.986 | 0.126 |
| Mean | Stdev |
6_H41-35_O6-6 | 2.001 | 0.184 |
| Mean | Stdev |
6_N3-35_H1-6 | 1.997 | 0.111 |
| Mean | Stdev |
6_O2-35_H21-6 | 1.891 | 0.121 |
| Mean | Stdev |
7_H61-34_O4-7 | 2.009 | 0.302 |
| Mean | Stdev |
7_N1-34_H3-7 | 1.975 | 0.212 |
| Mean | Stdev |
8_H61-33_O4-8 | 1.990 | 0.176 |
| Mean | Stdev |
8_N1-33_H3-8 | 1.970 | 0.119 |
| Mean | Stdev |
9_H61-32_O4-9 | 2.007 | 0.191 |
| Mean | Stdev |
9_N1-32_H3-9 | 1.955 | 0.112 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | N1-H3_1-40 | 3.3992 | 2.9394 |
1 | H61-O4_1-40 | 3.4546 | 2.9897 |
2 | N1-H3_2-39 | 2.2350 | 1.4790 |
2 | H61-O4_2-39 | 2.3795 | 1.6942 |
3 | O6-H41_3-38 | 1.9987 | 0.1837 |
3 | H1-N3_3-38 | 1.9693 | 0.0995 |
3 | H21-O2_3-38 | 1.8968 | 0.1265 |
4 | H3-N1_4-37 | 1.9818 | 0.1678 |
4 | O4-H61_4-37 | 2.0029 | 0.2583 |
5 | N1-H3_5-36 | 1.9863 | 0.1256 |
5 | H61-O4_5-36 | 1.9820 | 0.1834 |
6 | H41-O6_6-35 | 2.0012 | 0.1837 |
6 | N3-H1_6-35 | 1.9966 | 0.1106 |
6 | O2-H21_6-35 | 1.8915 | 0.1213 |
7 | N1-H3_7-34 | 1.9748 | 0.2116 |
7 | H61-O4_7-34 | 2.0094 | 0.3018 |
8 | N1-H3_8-33 | 1.9696 | 0.1187 |
8 | H61-O4_8-33 | 1.9905 | 0.1756 |
9 | N1-H3_9-32 | 1.9552 | 0.1120 |
9 | H61-O4_9-32 | 2.0067 | 0.1906 |
10 | H41-O6_10-31 | 1.9920 | 0.1775 |
10 | N3-H1_10-31 | 1.9613 | 0.0964 |
10 | O2-H21_10-31 | 1.8736 | 0.1150 |
11 | H3-N1_11-30 | 1.9412 | 0.1065 |
11 | O4-H61_11-30 | 2.0409 | 0.2146 |
12 | H3-N1_12-29 | 1.9685 | 0.1223 |
12 | O4-H61_12-29 | 2.0168 | 0.2055 |
13 | H3-N1_13-28 | 1.9808 | 0.1245 |
13 | O4-H61_13-28 | 2.0172 | 0.2031 |
14 | H41-O6_14-27 | 1.9876 | 0.1835 |
14 | N3-H1_14-27 | 1.9695 | 0.0997 |
14 | O2-H21_14-27 | 1.8984 | 0.1297 |
15 | H3-N1_15-26 | 1.9595 | 0.1271 |
15 | O4-H61_15-26 | 2.0196 | 0.2251 |
16 | H3-N1_16-25 | 1.9667 | 0.1160 |
16 | O4-H61_16-25 | 2.0052 | 0.1992 |
17 | O6-H41_17-24 | 1.9920 | 0.1877 |
17 | H1-N3_17-24 | 1.9909 | 0.1086 |
17 | H21-O2_17-24 | 1.8874 | 0.1215 |
18 | H3-N1_18-23 | 2.0114 | 0.1406 |
18 | O4-H61_18-23 | 1.9425 | 0.1590 |
19 | N1-H3_19-22 | 2.0288 | 0.5908 |
19 | H61-O4_19-22 | 2.1454 | 0.6007 |
20 | H3-N1_20-21 | 4.7122 | 1.4099 |
20 | O4-H61_20-21 | 3.8604 | 1.4828 |