Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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5' |
C |
- |
C |
- |
A |
- |
G |
- |
G |
- |
A |
- |
C |
- |
A |
- |
A |
- |
T |
- |
A |
- |
G |
- |
A |
- |
G |
- |
A |
- |
C |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
- |
G |
- |
T |
- |
C |
- |
C |
- |
T |
- |
G |
- |
T |
- |
T |
- |
A |
- |
T |
- |
C |
- |
T |
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C |
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T |
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G |
5' |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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18 |
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17 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-32_O6-1 | 2.515 | 2.845 |
| Mean | Stdev |
1_N3-32_H1-1 | 2.394 | 2.231 |
| Mean | Stdev |
1_O2-32_H21-1 | 2.297 | 1.841 |
| Mean | Stdev |
10_H3-23_N1-10 | 1.986 | 0.122 |
| Mean | Stdev |
10_O4-23_H61-10 | 2.031 | 0.209 |
| Mean | Stdev |
11_H61-22_O4-11 | 2.041 | 0.221 |
| Mean | Stdev |
11_N1-22_H3-11 | 1.962 | 0.123 |
| Mean | Stdev |
12_H1-21_N3-12 | 1.969 | 0.095 |
| Mean | Stdev |
12_H21-21_O2-12 | 1.909 | 0.133 |
| Mean | Stdev |
12_O6-21_H41-12 | 1.982 | 0.170 |
| Mean | Stdev |
13_H61-20_O4-13 | 1.995 | 0.198 |
| Mean | Stdev |
13_N1-20_H3-13 | 1.978 | 0.130 |
| Mean | Stdev |
14_H1-19_N3-14 | 1.959 | 0.094 |
| Mean | Stdev |
14_H21-19_O2-14 | 1.907 | 0.129 |
| Mean | Stdev |
14_O6-19_H41-14 | 1.971 | 0.165 |
| Mean | Stdev |
15_H61-18_O4-15 | 1.996 | 0.194 |
| Mean | Stdev |
15_N1-18_H3-15 | 1.990 | 0.135 |
| Mean | Stdev |
16_H41-17_O6-16 | 2.035 | 0.276 |
| Mean | Stdev |
16_N3-17_H1-16 | 2.022 | 0.146 |
| Mean | Stdev |
16_O2-17_H21-16 | 1.915 | 0.145 |
| Mean | Stdev |
2_H41-31_O6-2 | 1.970 | 0.173 |
| Mean | Stdev |
2_N3-31_H1-2 | 1.967 | 0.097 |
| Mean | Stdev |
2_O2-31_H21-2 | 1.883 | 0.119 |
| Mean | Stdev |
3_H61-30_O4-3 | 1.992 | 0.178 |
| Mean | Stdev |
3_N1-30_H3-3 | 1.964 | 0.117 |
| Mean | Stdev |
4_H1-29_N3-4 | 1.967 | 0.093 |
| Mean | Stdev |
4_H21-29_O2-4 | 1.907 | 0.132 |
| Mean | Stdev |
4_O6-29_H41-4 | 1.986 | 0.171 |
| Mean | Stdev |
5_H1-28_N3-5 | 1.964 | 0.092 |
| Mean | Stdev |
5_H21-28_O2-5 | 1.904 | 0.129 |
| Mean | Stdev |
5_O6-28_H41-5 | 1.958 | 0.153 |
| Mean | Stdev |
6_H61-27_O4-6 | 1.964 | 0.169 |
| Mean | Stdev |
6_N1-27_H3-6 | 1.990 | 0.132 |
| Mean | Stdev |
7_H41-26_O6-7 | 1.992 | 0.169 |
| Mean | Stdev |
7_N3-26_H1-7 | 1.981 | 0.101 |
| Mean | Stdev |
7_O2-26_H21-7 | 1.887 | 0.121 |
| Mean | Stdev |
8_H61-25_O4-8 | 2.010 | 0.258 |
| Mean | Stdev |
8_N1-25_H3-8 | 1.967 | 0.159 |
| Mean | Stdev |
9_H61-24_O4-9 | 2.007 | 0.178 |
| Mean | Stdev |
9_N1-24_H3-9 | 1.989 | 0.125 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-32 | 2.5149 | 2.8445 |
1 | N3-H1_1-32 | 2.3936 | 2.2313 |
1 | O2-H21_1-32 | 2.2975 | 1.8407 |
2 | H41-O6_2-31 | 1.9705 | 0.1730 |
2 | N3-H1_2-31 | 1.9666 | 0.0966 |
2 | O2-H21_2-31 | 1.8830 | 0.1186 |
3 | N1-H3_3-30 | 1.9635 | 0.1172 |
3 | H61-O4_3-30 | 1.9916 | 0.1782 |
4 | O6-H41_4-29 | 1.9856 | 0.1711 |
4 | H1-N3_4-29 | 1.9672 | 0.0935 |
4 | H21-O2_4-29 | 1.9065 | 0.1321 |
5 | O6-H41_5-28 | 1.9579 | 0.1532 |
5 | H1-N3_5-28 | 1.9635 | 0.0921 |
5 | H21-O2_5-28 | 1.9039 | 0.1291 |
6 | N1-H3_6-27 | 1.9904 | 0.1315 |
6 | H61-O4_6-27 | 1.9635 | 0.1688 |
7 | H41-O6_7-26 | 1.9915 | 0.1692 |
7 | N3-H1_7-26 | 1.9814 | 0.1010 |
7 | O2-H21_7-26 | 1.8874 | 0.1207 |
8 | N1-H3_8-25 | 1.9674 | 0.1585 |
8 | H61-O4_8-25 | 2.0095 | 0.2576 |
9 | N1-H3_9-24 | 1.9891 | 0.1247 |
9 | H61-O4_9-24 | 2.0075 | 0.1782 |
10 | H3-N1_10-23 | 1.9865 | 0.1224 |
10 | O4-H61_10-23 | 2.0311 | 0.2094 |
11 | N1-H3_11-22 | 1.9625 | 0.1233 |
11 | H61-O4_11-22 | 2.0405 | 0.2212 |
12 | O6-H41_12-21 | 1.9823 | 0.1696 |
12 | H1-N3_12-21 | 1.9692 | 0.0954 |
12 | H21-O2_12-21 | 1.9093 | 0.1328 |
13 | N1-H3_13-20 | 1.9783 | 0.1298 |
13 | H61-O4_13-20 | 1.9948 | 0.1981 |
14 | O6-H41_14-19 | 1.9711 | 0.1645 |
14 | H1-N3_14-19 | 1.9589 | 0.0941 |
14 | H21-O2_14-19 | 1.9070 | 0.1289 |
15 | N1-H3_15-18 | 1.9900 | 0.1349 |
15 | H61-O4_15-18 | 1.9959 | 0.1941 |
16 | H41-O6_16-17 | 2.0346 | 0.2759 |
16 | N3-H1_16-17 | 2.0224 | 0.1458 |
16 | O2-H21_16-17 | 1.9155 | 0.1454 |