Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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C |
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T |
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A |
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T |
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A |
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A |
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A |
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C |
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G |
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C |
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C |
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T |
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A |
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T |
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A |
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A |
3' |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
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G |
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G |
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A |
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T |
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A |
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T |
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T |
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T |
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G |
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C |
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G |
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G |
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A |
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T |
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A |
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T |
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T |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.003 | 0.145 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.911 | 0.156 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.006 | 0.258 |
| Mean | Stdev |
10_H41-27_O6-10 | 1.990 | 0.185 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.969 | 0.103 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.900 | 0.127 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.963 | 0.090 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.876 | 0.116 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.962 | 0.160 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.969 | 0.167 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.963 | 0.092 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.897 | 0.124 |
| Mean | Stdev |
13_H41-24_O6-13 | 2.004 | 0.188 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.963 | 0.095 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.885 | 0.124 |
| Mean | Stdev |
14_H3-23_N1-14 | 1.963 | 0.118 |
| Mean | Stdev |
14_O4-23_H61-14 | 2.045 | 0.230 |
| Mean | Stdev |
15_H61-22_O4-15 | 2.019 | 0.203 |
| Mean | Stdev |
15_N1-22_H3-15 | 1.995 | 0.129 |
| Mean | Stdev |
16_H3-21_N1-16 | 1.984 | 0.125 |
| Mean | Stdev |
16_O4-21_H61-16 | 2.042 | 0.222 |
| Mean | Stdev |
17_H61-20_O4-17 | 2.058 | 0.266 |
| Mean | Stdev |
17_N1-20_H3-17 | 1.977 | 0.143 |
| Mean | Stdev |
18_H61-19_O4-18 | 3.574 | 2.579 |
| Mean | Stdev |
18_N1-19_H3-18 | 3.417 | 2.438 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.957 | 0.161 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.959 | 0.091 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.887 | 0.120 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.992 | 0.173 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.961 | 0.091 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.884 | 0.122 |
| Mean | Stdev |
4_H3-33_N1-4 | 1.956 | 0.117 |
| Mean | Stdev |
4_O4-33_H61-4 | 2.063 | 0.245 |
| Mean | Stdev |
5_H61-32_O4-5 | 2.023 | 0.218 |
| Mean | Stdev |
5_N1-32_H3-5 | 1.994 | 0.130 |
| Mean | Stdev |
6_H3-31_N1-6 | 1.983 | 0.126 |
| Mean | Stdev |
6_O4-31_H61-6 | 2.048 | 0.230 |
| Mean | Stdev |
7_H61-30_O4-7 | 2.021 | 0.207 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.972 | 0.123 |
| Mean | Stdev |
8_H61-29_O4-8 | 1.996 | 0.182 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.967 | 0.119 |
| Mean | Stdev |
9_H61-28_O4-9 | 1.997 | 0.186 |
| Mean | Stdev |
9_N1-28_H3-9 | 1.965 | 0.122 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0065 | 0.2576 |
1 | H1-N3_1-36 | 2.0032 | 0.1453 |
1 | H21-O2_1-36 | 1.9112 | 0.1564 |
2 | H41-O6_2-35 | 1.9572 | 0.1611 |
2 | N3-H1_2-35 | 1.9591 | 0.0908 |
2 | O2-H21_2-35 | 1.8875 | 0.1203 |
3 | H41-O6_3-34 | 1.9915 | 0.1730 |
3 | N3-H1_3-34 | 1.9609 | 0.0912 |
3 | O2-H21_3-34 | 1.8843 | 0.1223 |
4 | H3-N1_4-33 | 1.9560 | 0.1174 |
4 | O4-H61_4-33 | 2.0626 | 0.2452 |
5 | N1-H3_5-32 | 1.9936 | 0.1298 |
5 | H61-O4_5-32 | 2.0226 | 0.2185 |
6 | H3-N1_6-31 | 1.9834 | 0.1263 |
6 | O4-H61_6-31 | 2.0482 | 0.2295 |
7 | N1-H3_7-30 | 1.9720 | 0.1229 |
7 | H61-O4_7-30 | 2.0214 | 0.2072 |
8 | N1-H3_8-29 | 1.9673 | 0.1188 |
8 | H61-O4_8-29 | 1.9955 | 0.1822 |
9 | N1-H3_9-28 | 1.9646 | 0.1218 |
9 | H61-O4_9-28 | 1.9966 | 0.1862 |
10 | H41-O6_10-27 | 1.9896 | 0.1851 |
10 | N3-H1_10-27 | 1.9689 | 0.1030 |
10 | O2-H21_10-27 | 1.8998 | 0.1273 |
11 | O6-H41_11-26 | 1.9617 | 0.1595 |
11 | H1-N3_11-26 | 1.9630 | 0.0903 |
11 | H21-O2_11-26 | 1.8757 | 0.1162 |
12 | H41-O6_12-25 | 1.9689 | 0.1665 |
12 | N3-H1_12-25 | 1.9629 | 0.0920 |
12 | O2-H21_12-25 | 1.8966 | 0.1236 |
13 | H41-O6_13-24 | 2.0039 | 0.1879 |
13 | N3-H1_13-24 | 1.9627 | 0.0953 |
13 | O2-H21_13-24 | 1.8849 | 0.1243 |
14 | H3-N1_14-23 | 1.9628 | 0.1176 |
14 | O4-H61_14-23 | 2.0450 | 0.2300 |
15 | N1-H3_15-22 | 1.9948 | 0.1285 |
15 | H61-O4_15-22 | 2.0186 | 0.2032 |
16 | H3-N1_16-21 | 1.9842 | 0.1249 |
16 | O4-H61_16-21 | 2.0417 | 0.2222 |
17 | N1-H3_17-20 | 1.9771 | 0.1426 |
17 | H61-O4_17-20 | 2.0580 | 0.2659 |
18 | N1-H3_18-19 | 3.4169 | 2.4382 |
18 | H61-O4_18-19 | 3.5744 | 2.5792 |