Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
C |
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A |
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C |
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G |
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G |
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A |
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A |
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C |
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C |
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G |
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G |
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T |
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T |
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C |
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C |
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G |
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T |
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G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
G |
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T |
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G |
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C |
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C |
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T |
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T |
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G |
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G |
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C |
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C |
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A |
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A |
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G |
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G |
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C |
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A |
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C |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H41-36_O6-1 | 2.273 | 1.137 |
| Mean | Stdev |
1_N3-36_H1-1 | 2.186 | 0.905 |
| Mean | Stdev |
1_O2-36_H21-1 | 2.111 | 0.849 |
| Mean | Stdev |
10_H1-27_N3-10 | 1.967 | 0.094 |
| Mean | Stdev |
10_H21-27_O2-10 | 1.876 | 0.117 |
| Mean | Stdev |
10_O6-27_H41-10 | 1.967 | 0.170 |
| Mean | Stdev |
11_H1-26_N3-11 | 1.968 | 0.093 |
| Mean | Stdev |
11_H21-26_O2-11 | 1.900 | 0.128 |
| Mean | Stdev |
11_O6-26_H41-11 | 1.988 | 0.171 |
| Mean | Stdev |
12_H3-25_N1-12 | 1.957 | 0.115 |
| Mean | Stdev |
12_O4-25_H61-12 | 1.998 | 0.187 |
| Mean | Stdev |
13_H3-24_N1-13 | 1.978 | 0.125 |
| Mean | Stdev |
13_O4-24_H61-13 | 1.996 | 0.191 |
| Mean | Stdev |
14_H41-23_O6-14 | 1.975 | 0.172 |
| Mean | Stdev |
14_N3-23_H1-14 | 1.974 | 0.095 |
| Mean | Stdev |
14_O2-23_H21-14 | 1.916 | 0.134 |
| Mean | Stdev |
15_H41-22_O6-15 | 1.957 | 0.162 |
| Mean | Stdev |
15_N3-22_H1-15 | 1.963 | 0.092 |
| Mean | Stdev |
15_O2-22_H21-15 | 1.879 | 0.119 |
| Mean | Stdev |
16_H1-21_N3-16 | 1.986 | 0.117 |
| Mean | Stdev |
16_H21-21_O2-16 | 1.894 | 0.125 |
| Mean | Stdev |
16_O6-21_H41-16 | 1.987 | 0.216 |
| Mean | Stdev |
17_H3-20_N1-17 | 1.968 | 0.119 |
| Mean | Stdev |
17_O4-20_H61-17 | 2.005 | 0.205 |
| Mean | Stdev |
18_H1-19_N3-18 | 4.054 | 2.872 |
| Mean | Stdev |
18_H21-19_O2-18 | 3.908 | 2.805 |
| Mean | Stdev |
18_O6-19_H41-18 | 4.393 | 3.220 |
| Mean | Stdev |
2_H61-35_O4-2 | 1.982 | 0.192 |
| Mean | Stdev |
2_N1-35_H3-2 | 1.972 | 0.124 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.986 | 0.179 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.982 | 0.100 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.887 | 0.121 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.960 | 0.090 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.881 | 0.119 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.951 | 0.151 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.978 | 0.096 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.917 | 0.134 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.981 | 0.171 |
| Mean | Stdev |
6_H61-31_O4-6 | 2.000 | 0.194 |
| Mean | Stdev |
6_N1-31_H3-6 | 1.980 | 0.121 |
| Mean | Stdev |
7_H61-30_O4-7 | 1.999 | 0.189 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.961 | 0.113 |
| Mean | Stdev |
8_H41-29_O6-8 | 1.990 | 0.201 |
| Mean | Stdev |
8_N3-29_H1-8 | 1.971 | 0.106 |
| Mean | Stdev |
8_O2-29_H21-8 | 1.918 | 0.138 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.967 | 0.166 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.960 | 0.090 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.879 | 0.120 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | H41-O6_1-36 | 2.2728 | 1.1369 |
1 | N3-H1_1-36 | 2.1859 | 0.9055 |
1 | O2-H21_1-36 | 2.1114 | 0.8492 |
2 | N1-H3_2-35 | 1.9718 | 0.1238 |
2 | H61-O4_2-35 | 1.9825 | 0.1916 |
3 | H41-O6_3-34 | 1.9857 | 0.1792 |
3 | N3-H1_3-34 | 1.9818 | 0.0998 |
3 | O2-H21_3-34 | 1.8866 | 0.1214 |
4 | O6-H41_4-33 | 1.9507 | 0.1508 |
4 | H1-N3_4-33 | 1.9600 | 0.0904 |
4 | H21-O2_4-33 | 1.8814 | 0.1194 |
5 | O6-H41_5-32 | 1.9809 | 0.1707 |
5 | H1-N3_5-32 | 1.9776 | 0.0958 |
5 | H21-O2_5-32 | 1.9170 | 0.1344 |
6 | N1-H3_6-31 | 1.9796 | 0.1214 |
6 | H61-O4_6-31 | 1.9997 | 0.1941 |
7 | N1-H3_7-30 | 1.9608 | 0.1126 |
7 | H61-O4_7-30 | 1.9992 | 0.1889 |
8 | H41-O6_8-29 | 1.9895 | 0.2005 |
8 | N3-H1_8-29 | 1.9711 | 0.1062 |
8 | O2-H21_8-29 | 1.9179 | 0.1377 |
9 | H41-O6_9-28 | 1.9672 | 0.1655 |
9 | N3-H1_9-28 | 1.9598 | 0.0902 |
9 | O2-H21_9-28 | 1.8793 | 0.1197 |
10 | O6-H41_10-27 | 1.9668 | 0.1695 |
10 | H1-N3_10-27 | 1.9667 | 0.0942 |
10 | H21-O2_10-27 | 1.8764 | 0.1175 |
11 | O6-H41_11-26 | 1.9875 | 0.1711 |
11 | H1-N3_11-26 | 1.9685 | 0.0935 |
11 | H21-O2_11-26 | 1.8999 | 0.1279 |
12 | H3-N1_12-25 | 1.9574 | 0.1151 |
12 | O4-H61_12-25 | 1.9977 | 0.1872 |
13 | H3-N1_13-24 | 1.9778 | 0.1249 |
13 | O4-H61_13-24 | 1.9959 | 0.1912 |
14 | H41-O6_14-23 | 1.9749 | 0.1724 |
14 | N3-H1_14-23 | 1.9736 | 0.0951 |
14 | O2-H21_14-23 | 1.9156 | 0.1343 |
15 | H41-O6_15-22 | 1.9573 | 0.1619 |
15 | N3-H1_15-22 | 1.9628 | 0.0916 |
15 | O2-H21_15-22 | 1.8795 | 0.1187 |
16 | O6-H41_16-21 | 1.9874 | 0.2164 |
16 | H1-N3_16-21 | 1.9865 | 0.1166 |
16 | H21-O2_16-21 | 1.8938 | 0.1248 |
17 | H3-N1_17-20 | 1.9682 | 0.1190 |
17 | O4-H61_17-20 | 2.0054 | 0.2050 |
18 | O6-H41_18-19 | 4.3929 | 3.2198 |
18 | H1-N3_18-19 | 4.0540 | 2.8719 |
18 | H21-O2_18-19 | 3.9076 | 2.8052 |