Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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10 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
- |
G |
- |
C |
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G |
- |
C |
- |
G |
- |
C |
- |
A |
- |
C |
- |
C |
- |
A |
- |
C |
- |
G |
- |
C |
- |
G |
- |
C |
- |
G |
- |
G |
3' |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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x |
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3' |
C |
- |
C |
- |
G |
- |
C |
- |
G |
- |
C |
- |
G |
- |
T |
- |
G |
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G |
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T |
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G |
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C |
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G |
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C |
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G |
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C |
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C |
5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.012 | 0.492 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.930 | 0.556 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.022 | 0.548 |
| Mean | Stdev |
10_H41-27_O6-10 | 1.988 | 0.222 |
| Mean | Stdev |
10_N3-27_H1-10 | 1.966 | 0.112 |
| Mean | Stdev |
10_O2-27_H21-10 | 1.867 | 0.114 |
| Mean | Stdev |
11_H61-26_O4-11 | 1.970 | 0.188 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.994 | 0.128 |
| Mean | Stdev |
12_H41-25_O6-12 | 1.985 | 0.197 |
| Mean | Stdev |
12_N3-25_H1-12 | 1.978 | 0.110 |
| Mean | Stdev |
12_O2-25_H21-12 | 1.881 | 0.118 |
| Mean | Stdev |
13_H1-24_N3-13 | 1.965 | 0.090 |
| Mean | Stdev |
13_H21-24_O2-13 | 1.897 | 0.125 |
| Mean | Stdev |
13_O6-24_H41-13 | 1.958 | 0.157 |
| Mean | Stdev |
14_H41-23_O6-14 | 1.949 | 0.150 |
| Mean | Stdev |
14_N3-23_H1-14 | 1.961 | 0.089 |
| Mean | Stdev |
14_O2-23_H21-14 | 1.885 | 0.120 |
| Mean | Stdev |
15_H1-22_N3-15 | 1.973 | 0.094 |
| Mean | Stdev |
15_H21-22_O2-15 | 1.898 | 0.127 |
| Mean | Stdev |
15_O6-22_H41-15 | 1.957 | 0.159 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.952 | 0.154 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.968 | 0.092 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.894 | 0.122 |
| Mean | Stdev |
17_H1-20_N3-17 | 2.630 | 1.882 |
| Mean | Stdev |
17_H21-20_O2-17 | 2.617 | 1.999 |
| Mean | Stdev |
17_O6-20_H41-17 | 2.631 | 1.849 |
| Mean | Stdev |
18_H1-19_N3-18 | 25.894 | 11.379 |
| Mean | Stdev |
18_H21-19_O2-18 | 26.106 | 11.237 |
| Mean | Stdev |
18_O6-19_H41-18 | 25.938 | 11.227 |
| Mean | Stdev |
2_H1-35_N3-2 | 1.968 | 0.093 |
| Mean | Stdev |
2_H21-35_O2-2 | 1.900 | 0.126 |
| Mean | Stdev |
2_O6-35_H41-2 | 1.966 | 0.167 |
| Mean | Stdev |
3_H41-34_O6-3 | 1.962 | 0.166 |
| Mean | Stdev |
3_N3-34_H1-3 | 1.962 | 0.092 |
| Mean | Stdev |
3_O2-34_H21-3 | 1.883 | 0.118 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.969 | 0.092 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.897 | 0.124 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.956 | 0.155 |
| Mean | Stdev |
5_H41-32_O6-5 | 1.951 | 0.162 |
| Mean | Stdev |
5_N3-32_H1-5 | 1.967 | 0.102 |
| Mean | Stdev |
5_O2-32_H21-5 | 1.892 | 0.127 |
| Mean | Stdev |
6_H1-31_N3-6 | 1.965 | 0.091 |
| Mean | Stdev |
6_H21-31_O2-6 | 1.894 | 0.122 |
| Mean | Stdev |
6_O6-31_H41-6 | 1.956 | 0.160 |
| Mean | Stdev |
7_H41-30_O6-7 | 1.966 | 0.159 |
| Mean | Stdev |
7_N3-30_H1-7 | 1.974 | 0.093 |
| Mean | Stdev |
7_O2-30_H21-7 | 1.892 | 0.125 |
| Mean | Stdev |
8_H61-29_O4-8 | 1.970 | 0.181 |
| Mean | Stdev |
8_N1-29_H3-8 | 1.973 | 0.120 |
| Mean | Stdev |
9_H41-28_O6-9 | 1.979 | 0.179 |
| Mean | Stdev |
9_N3-28_H1-9 | 1.974 | 0.104 |
| Mean | Stdev |
9_O2-28_H21-9 | 1.919 | 0.142 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0217 | 0.5477 |
1 | H1-N3_1-36 | 2.0117 | 0.4924 |
1 | H21-O2_1-36 | 1.9297 | 0.5561 |
2 | O6-H41_2-35 | 1.9661 | 0.1672 |
2 | H1-N3_2-35 | 1.9681 | 0.0927 |
2 | H21-O2_2-35 | 1.9003 | 0.1262 |
3 | H41-O6_3-34 | 1.9619 | 0.1661 |
3 | N3-H1_3-34 | 1.9625 | 0.0922 |
3 | O2-H21_3-34 | 1.8835 | 0.1181 |
4 | O6-H41_4-33 | 1.9562 | 0.1554 |
4 | H1-N3_4-33 | 1.9694 | 0.0920 |
4 | H21-O2_4-33 | 1.8968 | 0.1237 |
5 | H41-O6_5-32 | 1.9507 | 0.1624 |
5 | N3-H1_5-32 | 1.9667 | 0.1016 |
5 | O2-H21_5-32 | 1.8920 | 0.1272 |
6 | O6-H41_6-31 | 1.9559 | 0.1599 |
6 | H1-N3_6-31 | 1.9647 | 0.0914 |
6 | H21-O2_6-31 | 1.8937 | 0.1220 |
7 | H41-O6_7-30 | 1.9657 | 0.1586 |
7 | N3-H1_7-30 | 1.9738 | 0.0927 |
7 | O2-H21_7-30 | 1.8922 | 0.1248 |
8 | N1-H3_8-29 | 1.9733 | 0.1204 |
8 | H61-O4_8-29 | 1.9700 | 0.1812 |
9 | H41-O6_9-28 | 1.9787 | 0.1786 |
9 | N3-H1_9-28 | 1.9740 | 0.1042 |
9 | O2-H21_9-28 | 1.9189 | 0.1417 |
10 | H41-O6_10-27 | 1.9880 | 0.2221 |
10 | N3-H1_10-27 | 1.9655 | 0.1116 |
10 | O2-H21_10-27 | 1.8674 | 0.1140 |
11 | N1-H3_11-26 | 1.9938 | 0.1283 |
11 | H61-O4_11-26 | 1.9697 | 0.1882 |
12 | H41-O6_12-25 | 1.9848 | 0.1968 |
12 | N3-H1_12-25 | 1.9779 | 0.1102 |
12 | O2-H21_12-25 | 1.8814 | 0.1179 |
13 | O6-H41_13-24 | 1.9575 | 0.1565 |
13 | H1-N3_13-24 | 1.9653 | 0.0903 |
13 | H21-O2_13-24 | 1.8966 | 0.1249 |
14 | H41-O6_14-23 | 1.9491 | 0.1503 |
14 | N3-H1_14-23 | 1.9611 | 0.0894 |
14 | O2-H21_14-23 | 1.8850 | 0.1198 |
15 | O6-H41_15-22 | 1.9567 | 0.1588 |
15 | H1-N3_15-22 | 1.9730 | 0.0938 |
15 | H21-O2_15-22 | 1.8979 | 0.1266 |
16 | H41-O6_16-21 | 1.9524 | 0.1539 |
16 | N3-H1_16-21 | 1.9680 | 0.0924 |
16 | O2-H21_16-21 | 1.8939 | 0.1225 |
17 | O6-H41_17-20 | 2.6305 | 1.8488 |
17 | H1-N3_17-20 | 2.6303 | 1.8817 |
17 | H21-O2_17-20 | 2.6168 | 1.9990 |
18 | O6-H41_18-19 | 25.9375 | 11.2273 |
18 | H1-N3_18-19 | 25.8937 | 11.3791 |
18 | H21-O2_18-19 | 26.1058 | 11.2374 |