Nucleic Acid Analysis - Hydrogen Bond Analysis
Canonical Hydrogen Bond Distances
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1 |
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2 |
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3 |
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4 |
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5 |
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6 |
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7 |
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8 |
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9 |
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11 |
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12 |
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13 |
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14 |
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15 |
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16 |
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17 |
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18 |
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5' |
G |
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C |
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T |
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G |
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G |
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C |
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A |
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T |
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G |
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A |
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A |
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G |
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C |
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G |
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A |
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C |
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G |
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C |
3' |
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3' |
C |
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G |
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A |
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C |
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C |
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G |
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T |
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A |
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C |
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T |
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T |
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C |
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G |
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C |
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C |
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5' |
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36 |
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35 |
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34 |
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33 |
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32 |
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31 |
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30 |
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29 |
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28 |
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27 |
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26 |
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25 |
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24 |
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23 |
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22 |
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21 |
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20 |
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19 |
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Interactive Sequence (see Help)
| Mean | Stdev |
1_H1-36_N3-1 | 2.020 | 0.405 |
| Mean | Stdev |
1_H21-36_O2-1 | 1.945 | 0.479 |
| Mean | Stdev |
1_O6-36_H41-1 | 2.018 | 0.452 |
| Mean | Stdev |
10_H61-27_O4-10 | 1.993 | 0.199 |
| Mean | Stdev |
10_N1-27_H3-10 | 1.990 | 0.134 |
| Mean | Stdev |
11_H61-26_O4-11 | 2.006 | 0.192 |
| Mean | Stdev |
11_N1-26_H3-11 | 1.944 | 0.107 |
| Mean | Stdev |
12_H1-25_N3-12 | 1.966 | 0.090 |
| Mean | Stdev |
12_H21-25_O2-12 | 1.900 | 0.123 |
| Mean | Stdev |
12_O6-25_H41-12 | 1.961 | 0.153 |
| Mean | Stdev |
13_H41-24_O6-13 | 1.964 | 0.164 |
| Mean | Stdev |
13_N3-24_H1-13 | 1.966 | 0.093 |
| Mean | Stdev |
13_O2-24_H21-13 | 1.897 | 0.123 |
| Mean | Stdev |
14_H1-23_N3-14 | 1.964 | 0.092 |
| Mean | Stdev |
14_H21-23_O2-14 | 1.884 | 0.119 |
| Mean | Stdev |
14_O6-23_H41-14 | 1.961 | 0.159 |
| Mean | Stdev |
15_H61-22_O4-15 | 1.944 | 0.153 |
| Mean | Stdev |
15_N1-22_H3-15 | 2.007 | 0.134 |
| Mean | Stdev |
16_H41-21_O6-16 | 1.977 | 0.160 |
| Mean | Stdev |
16_N3-21_H1-16 | 1.976 | 0.097 |
| Mean | Stdev |
16_O2-21_H21-16 | 1.891 | 0.122 |
| Mean | Stdev |
17_H1-20_N3-17 | 1.965 | 0.094 |
| Mean | Stdev |
17_H21-20_O2-17 | 1.893 | 0.125 |
| Mean | Stdev |
17_O6-20_H41-17 | 1.958 | 0.161 |
| Mean | Stdev |
18_H41-19_O6-18 | 3.936 | 3.480 |
| Mean | Stdev |
18_N3-19_H1-18 | 3.724 | 3.263 |
| Mean | Stdev |
18_O2-19_H21-18 | 3.989 | 3.990 |
| Mean | Stdev |
2_H41-35_O6-2 | 1.982 | 0.164 |
| Mean | Stdev |
2_N3-35_H1-2 | 1.970 | 0.093 |
| Mean | Stdev |
2_O2-35_H21-2 | 1.898 | 0.125 |
| Mean | Stdev |
3_H3-34_N1-3 | 1.966 | 0.118 |
| Mean | Stdev |
3_O4-34_H61-3 | 1.998 | 0.190 |
| Mean | Stdev |
4_H1-33_N3-4 | 1.962 | 0.091 |
| Mean | Stdev |
4_H21-33_O2-4 | 1.878 | 0.118 |
| Mean | Stdev |
4_O6-33_H41-4 | 1.970 | 0.158 |
| Mean | Stdev |
5_H1-32_N3-5 | 1.972 | 0.093 |
| Mean | Stdev |
5_H21-32_O2-5 | 1.922 | 0.134 |
| Mean | Stdev |
5_O6-32_H41-5 | 1.958 | 0.154 |
| Mean | Stdev |
6_H41-31_O6-6 | 1.962 | 0.159 |
| Mean | Stdev |
6_N3-31_H1-6 | 1.965 | 0.091 |
| Mean | Stdev |
6_O2-31_H21-6 | 1.887 | 0.119 |
| Mean | Stdev |
7_H61-30_O4-7 | 2.012 | 0.193 |
| Mean | Stdev |
7_N1-30_H3-7 | 1.978 | 0.118 |
| Mean | Stdev |
8_H3-29_N1-8 | 1.988 | 0.126 |
| Mean | Stdev |
8_O4-29_H61-8 | 2.010 | 0.201 |
| Mean | Stdev |
9_H1-28_N3-9 | 1.973 | 0.098 |
| Mean | Stdev |
9_H21-28_O2-9 | 1.887 | 0.124 |
| Mean | Stdev |
9_O6-28_H41-9 | 1.968 | 0.161 |
Nucleotide Number | Hydrogen Bond | Mean | Stdev |
1 | O6-H41_1-36 | 2.0176 | 0.4523 |
1 | H1-N3_1-36 | 2.0204 | 0.4048 |
1 | H21-O2_1-36 | 1.9452 | 0.4786 |
2 | H41-O6_2-35 | 1.9818 | 0.1644 |
2 | N3-H1_2-35 | 1.9698 | 0.0931 |
2 | O2-H21_2-35 | 1.8980 | 0.1252 |
3 | H3-N1_3-34 | 1.9665 | 0.1184 |
3 | O4-H61_3-34 | 1.9979 | 0.1904 |
4 | O6-H41_4-33 | 1.9695 | 0.1582 |
4 | H1-N3_4-33 | 1.9620 | 0.0906 |
4 | H21-O2_4-33 | 1.8779 | 0.1185 |
5 | O6-H41_5-32 | 1.9580 | 0.1537 |
5 | H1-N3_5-32 | 1.9716 | 0.0934 |
5 | H21-O2_5-32 | 1.9220 | 0.1339 |
6 | H41-O6_6-31 | 1.9623 | 0.1589 |
6 | N3-H1_6-31 | 1.9650 | 0.0913 |
6 | O2-H21_6-31 | 1.8870 | 0.1193 |
7 | N1-H3_7-30 | 1.9775 | 0.1180 |
7 | H61-O4_7-30 | 2.0119 | 0.1933 |
8 | H3-N1_8-29 | 1.9880 | 0.1255 |
8 | O4-H61_8-29 | 2.0095 | 0.2010 |
9 | O6-H41_9-28 | 1.9681 | 0.1609 |
9 | H1-N3_9-28 | 1.9732 | 0.0978 |
9 | H21-O2_9-28 | 1.8865 | 0.1239 |
10 | N1-H3_10-27 | 1.9902 | 0.1338 |
10 | H61-O4_10-27 | 1.9933 | 0.1990 |
11 | N1-H3_11-26 | 1.9435 | 0.1071 |
11 | H61-O4_11-26 | 2.0055 | 0.1923 |
12 | O6-H41_12-25 | 1.9610 | 0.1535 |
12 | H1-N3_12-25 | 1.9655 | 0.0903 |
12 | H21-O2_12-25 | 1.8998 | 0.1229 |
13 | H41-O6_13-24 | 1.9639 | 0.1635 |
13 | N3-H1_13-24 | 1.9662 | 0.0926 |
13 | O2-H21_13-24 | 1.8973 | 0.1228 |
14 | O6-H41_14-23 | 1.9609 | 0.1591 |
14 | H1-N3_14-23 | 1.9637 | 0.0920 |
14 | H21-O2_14-23 | 1.8839 | 0.1186 |
15 | N1-H3_15-22 | 2.0072 | 0.1342 |
15 | H61-O4_15-22 | 1.9440 | 0.1535 |
16 | H41-O6_16-21 | 1.9766 | 0.1600 |
16 | N3-H1_16-21 | 1.9760 | 0.0968 |
16 | O2-H21_16-21 | 1.8907 | 0.1219 |
17 | O6-H41_17-20 | 1.9576 | 0.1607 |
17 | H1-N3_17-20 | 1.9646 | 0.0942 |
17 | H21-O2_17-20 | 1.8926 | 0.1254 |
18 | H41-O6_18-19 | 3.9359 | 3.4800 |
18 | N3-H1_18-19 | 3.7240 | 3.2632 |
18 | O2-H21_18-19 | 3.9892 | 3.9902 |